High throughput sequencing methods and analysis for microbiome research
High-throughput sequencing technology is rapidly improving in quality, speed and cost. It is
therefore becoming more widely used to study whole communities of prokaryotes in many …
therefore becoming more widely used to study whole communities of prokaryotes in many …
A practical guide to amplicon and metagenomic analysis of microbiome data
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …
field of microbiome research, and massive microbiome datasets are now being generated …
[HTML][HTML] Fast and simple analysis of MiSeq amplicon sequencing data with MetaAmp
Microbial community profiling by barcoded 16S rRNA gene amplicon sequencing currently
has many applications in microbial ecology. The low costs of the parallel sequencing of …
has many applications in microbial ecology. The low costs of the parallel sequencing of …
Current challenges and best-practice protocols for microbiome analysis
Analyzing the microbiome of diverse species and environments using next-generation
sequencing techniques has significantly enhanced our understanding on metabolic …
sequencing techniques has significantly enhanced our understanding on metabolic …
Microbiome helper: a custom and streamlined workflow for microbiome research
Sequence-based approaches to study microbiomes, such as 16S rRNA gene sequencing
and metagenomics, are uncovering associations between microbial taxa and a myriad of …
and metagenomics, are uncovering associations between microbial taxa and a myriad of …
Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing
The human microbiome has emerged as a major player in regulating human health and
disease. Translational studies of the microbiome have the potential to indicate clinical …
disease. Translational studies of the microbiome have the potential to indicate clinical …
[HTML][HTML] MEGAN community edition-interactive exploration and analysis of large-scale microbiome sequencing data
There is increasing interest in employing shotgun sequencing, rather than amplicon
sequencing, to analyze microbiome samples. Typical projects may involve hundreds of …
sequencing, to analyze microbiome samples. Typical projects may involve hundreds of …
[HTML][HTML] Advances and challenges in metatranscriptomic analysis
Sequencing-based analyses of microbiomes have traditionally focused on addressing the
question of community membership and profiling taxonomic abundance through amplicon …
question of community membership and profiling taxonomic abundance through amplicon …
[HTML][HTML] Characterization of the gut microbiome using 16S or shotgun metagenomics
The advent of next generation sequencing (NGS) has enabled investigations of the gut
microbiome with unprecedented resolution and throughput. This has stimulated the …
microbiome with unprecedented resolution and throughput. This has stimulated the …
[HTML][HTML] MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
Background The study of microbiomes using whole-metagenome shotgun sequencing
enables the analysis of uncultivated microbial populations that may have important roles in …
enables the analysis of uncultivated microbial populations that may have important roles in …