The “genomic code”: DNA pervasively moulds chromatin structures leaving no room for “Junk”
G Bernardi - Life, 2021 - mdpi.com
The chromatin of the human genome was analyzed at three DNA size levels. At the first,
compartment level, two “gene spaces” were found many years ago: A GC-rich, gene-rich …
compartment level, two “gene spaces” were found many years ago: A GC-rich, gene-rich …
The genomic code: A pervasive encoding/molding of chromatin structures and a solution of the “non‐coding DNA” mystery
G Bernardi - BioEssays, 2019 - Wiley Online Library
Recent investigations have revealed 1) that the isochores of the human genome group into
two super‐families characterized by two different long‐range 3D structures, and 2) that these …
two super‐families characterized by two different long‐range 3D structures, and 2) that these …
The short-sequence design of DNA and its involvement in the 3-D structure of the genome
G Lamolle, V Sabbia, H Musto, G Bernardi - Scientific Reports, 2018 - nature.com
Recent investigations have shown that isochores are characterized by a 3-D structure which
is primarily responsible for the topology of chromatin domains. More precisely, an analysis of …
is primarily responsible for the topology of chromatin domains. More precisely, an analysis of …
Chromatin without the 30-nm fiber: constrained disorder instead of hierarchical folding
SV Razin, AA Gavrilov - epigenetics, 2014 - Taylor & Francis
Several hierarchical levels of DNA packaging are believed to exist in chromatin, starting
from a 10-nm chromatin fiber that is further packed into a 30-nm fiber. Transitions between …
from a 10-nm chromatin fiber that is further packed into a 30-nm fiber. Transitions between …
DNA topology in chromatin is defined by nucleosome spacing
T Nikitina, D Norouzi, SA Grigoryev, VB Zhurkin - Science advances, 2017 - science.org
In eukaryotic nucleosomes, DNA makes~ 1.7 superhelical turns around histone octamer.
However, there is a long-standing discrepancy between the nucleosome core structure …
However, there is a long-standing discrepancy between the nucleosome core structure …
The formation of chromatin domains involves a primary step based on the 3-D structure of DNA
G Bernardi - Scientific Reports, 2018 - nature.com
The general model presented here for the formation of chromatin domains, LADs and TADs,
is primarily based on the 3-D structures of the corresponding DNA sequences, the GC-poor …
is primarily based on the 3-D structures of the corresponding DNA sequences, the GC-poor …
Chromatin structure and dynamics: one nucleosome at a time
DM Presman, B Benítez, AL Lafuente… - Histochemistry and Cell …, 2024 - Springer
Eukaryotic genomes store information on many levels, including their linear DNA sequence,
the posttranslational modifications of its constituents (epigenetic modifications), and its three …
the posttranslational modifications of its constituents (epigenetic modifications), and its three …
Characterizing the nuclease accessibility of DNA in human cells to map higher order structures of chromatin
U Schwartz, A Németh, S Diermeier… - Nucleic acids …, 2019 - academic.oup.com
Packaging of DNA into chromatin regulates DNA accessibility and consequently all DNA-
dependent processes. The nucleosome is the basic packaging unit of DNA forming arrays …
dependent processes. The nucleosome is the basic packaging unit of DNA forming arrays …
Chromatin rules
RD Kornberg, Y Lorch - Nature Structural & Molecular Biology, 2007 - nature.com
Chromatin rules | Nature Structural & Molecular Biology Skip to main content Thank you for
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[HTML][HTML] What positions nucleosomes?–A model
R Kiyama, EN Trifonov - FEBS letters, 2002 - Elsevier
Here we propose a new determinant for localization of nucleosomes along genomic DNA, in
addition to sequence-dependent features. The new specific class of chromatin scaling …
addition to sequence-dependent features. The new specific class of chromatin scaling …