Pervasive coexpression of spatially proximal genes is buffered at the protein level
G Kustatscher, P Grabowski… - Molecular systems …, 2017 - embopress.org
Genes are not randomly distributed in the genome. In humans, 10% of protein‐coding genes
are transcribed from bidirectional promoters and many more are organised in larger clusters …
are transcribed from bidirectional promoters and many more are organised in larger clusters …
Coordinated expression domains in mammalian genomes
YH Woo, M Walker, GA Churchill - PloS one, 2010 - journals.plos.org
Background Gene order in eukaryotic genomes is not random. Genes showing similar
expression (coexpression) patterns are often clustered along the genome. The goal of this …
expression (coexpression) patterns are often clustered along the genome. The goal of this …
Chromosome-wide co-fluctuation of stochastic gene expression in mammalian cells
Gene expression is subject to stochastic noise, but to what extent and by which means such
stochastic variations are coordinated among different genes are unclear. We hypothesize …
stochastic variations are coordinated among different genes are unclear. We hypothesize …
Genetic correlations reveal the shared genetic architecture of transcription in human peripheral blood
SW Lukowski, LR Lloyd-Jones, A Holloway… - Nature …, 2017 - nature.com
Transcript co-expression is regulated by a combination of shared genetic and environmental
factors. Here, we estimate the proportion of co-expression that is due to shared genetic …
factors. Here, we estimate the proportion of co-expression that is due to shared genetic …
Gene length and proximity to neighbors affect genome-wide expression levels
Steady-state levels of mRNA in cells theoretically depend on the rate and efficiency of
transcription and posttranscriptional processing, on mRNA stability, on transcriptional …
transcription and posttranscriptional processing, on mRNA stability, on transcriptional …
The 3D organization of the yeast genome correlates with co-expression and reflects functional relations between genes
D Homouz, AS Kudlicki - PloS one, 2013 - journals.plos.org
The spatial organization of eukaryotic genomes is thought to play an important role in
regulating gene expression. The recent advances in experimental methods including …
regulating gene expression. The recent advances in experimental methods including …
Spatial localization of co-regulated genes exceeds genomic gene clustering in the Saccharomyces cerevisiae genome
While it has been long recognized that genes are not randomly positioned along the
genome, the degree to which its 3D structure influences the arrangement of genes has …
genome, the degree to which its 3D structure influences the arrangement of genes has …
Conservation and coevolution in the scale-free human gene coexpression network
IK Jordan, L Mariño-Ramírez, YI Wolf… - Molecular biology and …, 2004 - academic.oup.com
The role of natural selection in biology is well appreciated. Recently, however, a critical role
for physical principles of network self-organization in biological systems has been revealed …
for physical principles of network self-organization in biological systems has been revealed …
Origins of extrinsic variability in eukaryotic gene expression
Variable gene expression within a clonal population of cells has been implicated in a
number of important processes including mutation and evolution,, determination of cell fates …
number of important processes including mutation and evolution,, determination of cell fates …
Evolutionary origin and maintenance of coexpressed gene clusters in mammals
Gene order is not random with regard to gene expression in mammals: coexpressed genes,
and in particular housekeeping genes, are clustered along chromosomes more often than …
and in particular housekeeping genes, are clustered along chromosomes more often than …