Pervasive coexpression of spatially proximal genes is buffered at the protein level

G Kustatscher, P Grabowski… - Molecular systems …, 2017 - embopress.org
Genes are not randomly distributed in the genome. In humans, 10% of protein‐coding genes
are transcribed from bidirectional promoters and many more are organised in larger clusters …

Coordinated expression domains in mammalian genomes

YH Woo, M Walker, GA Churchill - PloS one, 2010 - journals.plos.org
Background Gene order in eukaryotic genomes is not random. Genes showing similar
expression (coexpression) patterns are often clustered along the genome. The goal of this …

Chromosome-wide co-fluctuation of stochastic gene expression in mammalian cells

M Sun, J Zhang - PLoS genetics, 2019 - journals.plos.org
Gene expression is subject to stochastic noise, but to what extent and by which means such
stochastic variations are coordinated among different genes are unclear. We hypothesize …

Genetic correlations reveal the shared genetic architecture of transcription in human peripheral blood

SW Lukowski, LR Lloyd-Jones, A Holloway… - Nature …, 2017 - nature.com
Transcript co-expression is regulated by a combination of shared genetic and environmental
factors. Here, we estimate the proportion of co-expression that is due to shared genetic …

Gene length and proximity to neighbors affect genome-wide expression levels

F Chiaromonte, W Miller, EE Bouhassira - Genome research, 2003 - genome.cshlp.org
Steady-state levels of mRNA in cells theoretically depend on the rate and efficiency of
transcription and posttranscriptional processing, on mRNA stability, on transcriptional …

The 3D organization of the yeast genome correlates with co-expression and reflects functional relations between genes

D Homouz, AS Kudlicki - PloS one, 2013 - journals.plos.org
The spatial organization of eukaryotic genomes is thought to play an important role in
regulating gene expression. The recent advances in experimental methods including …

Spatial localization of co-regulated genes exceeds genomic gene clustering in the Saccharomyces cerevisiae genome

S Ben-Elazar, Z Yakhini, I Yanai - Nucleic acids research, 2013 - academic.oup.com
While it has been long recognized that genes are not randomly positioned along the
genome, the degree to which its 3D structure influences the arrangement of genes has …

Conservation and coevolution in the scale-free human gene coexpression network

IK Jordan, L Mariño-Ramírez, YI Wolf… - Molecular biology and …, 2004 - academic.oup.com
The role of natural selection in biology is well appreciated. Recently, however, a critical role
for physical principles of network self-organization in biological systems has been revealed …

Origins of extrinsic variability in eukaryotic gene expression

D Volfson, J Marciniak, WJ Blake, N Ostroff… - Nature, 2006 - nature.com
Variable gene expression within a clonal population of cells has been implicated in a
number of important processes including mutation and evolution,, determination of cell fates …

Evolutionary origin and maintenance of coexpressed gene clusters in mammals

M Sémon, L Duret - Molecular biology and evolution, 2006 - academic.oup.com
Gene order is not random with regard to gene expression in mammals: coexpressed genes,
and in particular housekeeping genes, are clustered along chromosomes more often than …