Global genetic networks and the genotype-to-phenotype relationship

M Costanzo, E Kuzmin, J van Leeuwen, B Mair… - Cell, 2019 - cell.com
Genetic interactions identify combinations of genetic variants that impinge on phenotype.
With whole-genome sequence information available for thousands of individuals within a …

Quantitative analysis of fitness and genetic interactions in yeast on a genome scale

A Baryshnikova, M Costanzo, Y Kim, H Ding, J Koh… - Nature …, 2010 - nature.com
Global quantitative analysis of genetic interactions is a powerful approach for deciphering
the roles of genes and mapping functional relationships among pathways. Using colony size …

Environmental robustness of the global yeast genetic interaction network

M Costanzo, J Hou, V Messier, J Nelson, M Rahman… - Science, 2021 - science.org
INTRODUCTION Genetic interactions are identified when variants in different genes
combine to generate an unusual phenotype compared with the expected combined effect of …

Accounting for genetic interactions improves modeling of individual quantitative trait phenotypes in yeast

SKG Forsberg, JS Bloom, MJ Sadhu, L Kruglyak… - Nature …, 2017 - nature.com
Experiments in model organisms report abundant genetic interactions underlying
biologically important traits, whereas quantitative genetics theory predicts, and data support …

DRYGIN: a database of quantitative genetic interaction networks in yeast

JLY Koh, H Ding, M Costanzo… - Nucleic acids …, 2010 - academic.oup.com
Genetic interactions are highly informative for deciphering the underlying functional
principles that govern how genes control cell processes. Recent developments in Synthetic …

Systematic mapping of genetic interaction networks

SJ Dixon, M Costanzo, A Baryshnikova… - Annual review of …, 2009 - annualreviews.org
Genetic interactions influencing a phenotype of interest can be identified systematically
using libraries of genetic tools that perturb biological systems in a defined manner …

Genetic interaction networks: toward an understanding of heritability

A Baryshnikova, M Costanzo, CL Myers… - Annual review of …, 2013 - annualreviews.org
Understanding the relationship between the genotypes and phenotypes of individuals is key
for identifying genetic variants responsible for disease and developing successful …

Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

J Zhu, B Zhang, EN Smith, B Drees, RB Brem… - Nature …, 2008 - nature.com
A key goal of biology is to construct networks that predict complex system behavior. We
combine multiple types of molecular data, including genotypic, expression, transcription …

The complex underpinnings of genetic background effects

MN Mullis, T Matsui, R Schell, R Foree… - Nature …, 2018 - nature.com
Genetic interactions between mutations and standing polymorphisms can cause mutations
to show distinct phenotypic effects in different individuals. To characterize the genetic …

Genetic interaction networks: better understand to better predict

B Boucher, S Jenna - Frontiers in genetics, 2013 - frontiersin.org
A genetic interaction (GI) between two genes generally indicates that the phenotype of a
double mutant differs from what is expected from each individual mutant. In the last decade …