Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids
Polyploidy is a widespread phenomenon throughout eukaryotes. Due to the coexistence of
duplicated genomes, polyploids offer unique challenges for estimating gene expression …
duplicated genomes, polyploids offer unique challenges for estimating gene expression …
[HTML][HTML] An interspecific fungal hybrid reveals cross-kingdom rules for allopolyploid gene expression patterns
Polyploidy, a state in which the chromosome complement has undergone an increase, is a
major force in evolution. Understanding the consequences of polyploidy has received much …
major force in evolution. Understanding the consequences of polyploidy has received much …
Homeolog expression quantification methods for allopolyploids
TCY Kuo, M Hatakeyama, T Tameshige… - Briefings in …, 2020 - academic.oup.com
Genome duplication with hybridization, or allopolyploidization, occurs in animals, fungi and
plants, and is especially common in crop plants. There is an increasing interest in the study …
plants, and is especially common in crop plants. There is an increasing interest in the study …
[HTML][HTML] Duplicate gene expression in allopolyploid Gossypiumreveals two temporally distinct phases of expression evolution
Background Polyploidy has played a prominent role in shaping the genomic architecture of
the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species …
the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species …
PolyCat: a resource for genome categorization of sequencing reads from allopolyploid organisms
JT Page, AR Gingle, JA Udall - G3: Genes, genomes, genetics, 2013 - academic.oup.com
Read mapping is a fundamental part of next-generation genomic research but is
complicated by genome duplication in many plants. Categorizing DNA sequence reads into …
complicated by genome duplication in many plants. Categorizing DNA sequence reads into …
[HTML][HTML] Homoeolog expression bias and expression level dominance in allopolyploid cotton
Allopolyploidy is an evolutionary and mechanistically intriguing process, in that it entails the
reconciliation of two or more sets of diverged genomes and regulatory interactions. In this …
reconciliation of two or more sets of diverged genomes and regulatory interactions. In this …
[HTML][HTML] Polyploidy and the petal transcriptome of Gossypium
Background Genes duplicated by polyploidy (homoeologs) may be differentially expressed
in plant tissues. Recent research using DNA microarrays and RNAseq data have described …
in plant tissues. Recent research using DNA microarrays and RNAseq data have described …
A robust methodology for assessing differential homeolog contributions to the transcriptomes of allopolyploids
Polyploidy has played a pivotal and recurring role in angiosperm evolution. Allotetraploids
arise from hybridization between species and possess duplicated gene copies (homeologs) …
arise from hybridization between species and possess duplicated gene copies (homeologs) …
Unravelling gene expression of complex crop genomes
RJA Buggs - Heredity, 2013 - nature.com
Standing between us and global food shortage are high yielding varieties of wheat, oilseed
rape, potato, maize and sugarcane. These come from diverse plant families, but share the …
rape, potato, maize and sugarcane. These come from diverse plant families, but share the …
ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium
Q You, W Xu, K Zhang, L Zhang, X Yi… - Nucleic acids …, 2017 - academic.oup.com
Plant genera with both diploid and polyploid species are a common evolutionary
occurrence. Polyploids, especially allopolyploids such as cotton and wheat, are a great …
occurrence. Polyploids, especially allopolyploids such as cotton and wheat, are a great …