Multiple hypothesis testing in genomics

JJ Goeman, A Solari - Statistics in medicine, 2014 - Wiley Online Library
This paper presents an overview of the current state of the art in multiple testing in genomics
data from a user's perspective. We describe methods for familywise error control, false …

A review of modern multiple hypothesis testing, with particular attention to the false discovery proportion

A Farcomeni - Statistical methods in medical research, 2008 - journals.sagepub.com
In the last decade a growing amount of statistical research has been devoted to multiple
testing, motivated by a variety of applications in medicine, bioinformatics, genomics, brain …

[图书][B] Multiple testing procedures with applications to genomics

S Dudoit, MJ Van Der Laan, MJ van der Laan - 2008 - Springer
This book establishes the theoretical foundations of a general methodology for multiple
hypothesis testing and discusses its software implementation in R and SAS. The methods …

Multiple testing. Part I. Single-step procedures for control of general type I error rates

S Dudoit, MJ Van der Laan, KS Pollard - Statistical Applications in …, 2004 - degruyter.com
The present article proposes general single-step multiple testing procedures for controlling
Type I error rates defined as arbitrary parameters of the distribution of the number of Type I …

An efficient Monte Carlo approach to assessing statistical significance in genomic studies

DY Lin - Bioinformatics, 2005 - academic.oup.com
Motivation: Multiple hypothesis testing is a common problem in genome research,
particularly in microarray experiments and genomewide association studies. Failure to …

Genomics, prior probability, and statistical tests of multiple hypotheses

KF Manly, D Nettleton, JTG Hwang - Genome research, 2004 - genome.cshlp.org
Genomic methods have made statistical multiple-test methods important to geneticists and
molecular biologists. These tests apply to identification of quantitative trait loci and …

False discovery rate control with groups

JX Hu, H Zhao, HH Zhou - Journal of the American Statistical …, 2010 - Taylor & Francis
In the context of large-scale multiple hypothesis testing, the hypotheses often possess
certain group structures based on additional information such as Gene Ontology in gene …

MultipleTesting. com: A tool for life science researchers for multiple hypothesis testing correction

O Menyhart, B Weltz, B Győrffy - PloS one, 2021 - journals.plos.org
Scientists from nearly all disciplines face the problem of simultaneously evaluating many
hypotheses. Conducting multiple comparisons increases the likelihood that a non-negligible …

Estimation of false discovery rates in multiple testing: application to gene microarray data

CA Tsai, H Hsueh, JJ Chen - Biometrics, 2003 - academic.oup.com
Testing for significance with gene expression data from DNA microarray experiments
involves simultaneous comparisons of hundreds or thousands of genes. If R denotes the …

Resampling-based multiple testing for microarray data analysis

Y Ge, S Dudoit, TP Speed - Test, 2003 - Springer
The burgeoning field of genomics has revived interest in multiple testing procedures by
raising new methodological and computational challenges. For example, microarray …