hcapca: Automated Hierarchical Clustering and Principal Component Analysis of Large Metabolomic Datasets in R
Microbial natural product discovery programs face two main challenges today: rapidly
prioritizing strains for discovering new molecules and avoiding the rediscovery of already …
prioritizing strains for discovering new molecules and avoiding the rediscovery of already …
Natural product discovery using planes of principal component analysis in R (PoPCAR)
Rediscovery of known natural products hinders the discovery of new, unique scaffolds.
Efforts have mostly focused on streamlining the determination of what compounds are …
Efforts have mostly focused on streamlining the determination of what compounds are …
NPOmix: a machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters
Microbial specialized metabolites are an important source of and inspiration for many
pharmaceuticals, biotechnological products and play key roles in ecological processes …
pharmaceuticals, biotechnological products and play key roles in ecological processes …
Linking biosynthetic and chemical space to accelerate microbial secondary metabolite discovery
S Soldatou, GH Eldjarn, A Huerta-Uribe… - FEMS microbiology …, 2019 - academic.oup.com
Secondary metabolites can be viewed as a chemical language, facilitating communication
between microorganisms. From an ecological point of view, this metabolite exchange is in …
between microorganisms. From an ecological point of view, this metabolite exchange is in …
Microbial strain prioritization using metabolomics tools for the discovery of natural products
Y Hou, DR Braun, CR Michel, JL Klassen… - Analytical …, 2012 - ACS Publications
Natural products profoundly impact many research areas, including medicine, organic
chemistry, and cell biology. However, discovery of new natural products suffers from a lack …
chemistry, and cell biology. However, discovery of new natural products suffers from a lack …
A metabolomics guided exploration of marine natural product chemical space
DJ Floros, PR Jensen, PC Dorrestein, N Koyama - Metabolomics, 2016 - Springer
Introduction Natural products from culture collections have enormous impact in advancing
discovery programs for metabolites of biotechnological importance. These discovery efforts …
discovery programs for metabolites of biotechnological importance. These discovery efforts …
MetEx, a metabolomics explorer application for natural product discovery
BC Covington, MR Seyedsayamdost - ACS chemical biology, 2021 - ACS Publications
Advances in next-generation DNA sequencing technologies, bioinformatics, and mass
spectrometry-based metabolite detection have ushered in a new era of natural product …
spectrometry-based metabolite detection have ushered in a new era of natural product …
An integrated metabolomic and genomic mining workflow to uncover the biosynthetic potential of bacteria
M Maansson, NG Vynne, A Klitgaard, JL Nybo… - Msystems, 2016 - Am Soc Microbiol
Microorganisms are a rich source of bioactives; however, chemical identification is a major
bottleneck. Strategies that can prioritize the most prolific microbial strains and novel …
bottleneck. Strategies that can prioritize the most prolific microbial strains and novel …
Comprehensive large-scale integrative analysis of omics data to accelerate specialized metabolite discovery
JJR Louwen, JJJ Van Der Hooft - Msystems, 2021 - Am Soc Microbiol
Microbial specialized metabolites are key mediators in host-microbiome interactions. Most of
the chemical space produced by the microbiome currently remains unexplored and …
the chemical space produced by the microbiome currently remains unexplored and …
Computational genomics of specialized metabolism: from natural product discovery to microbiome ecology
MH Medema - Msystems, 2018 - Am Soc Microbiol
Microbial and plant specialized metabolites, also known as natural products, are key
mediators of microbe-microbe and host-microbe interactions and constitute a rich resource …
mediators of microbe-microbe and host-microbe interactions and constitute a rich resource …