Comprehensive Analysis of Codon Usage in Quercus Chloroplast Genome and Focus on psbA Gene

SL Shi, YQ Liu, RX Xia, L Qin - Genes, 2022 - mdpi.com
Quercus (oak) is an important economic and ecological tree species in the world, and it is
the necessary feed for oak silkworm feeding. Chloroplasts play an important role in green …

Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family

X Nie, P Deng, K Feng, P Liu, X Du, FM You… - Plant molecular biology …, 2014 - Springer
Codon usage bias (CUB) is an important evolutionary feature in a genome and has been
widely documented from prokaryotes to eukaryotes. However, the significance of CUB in the …

Analysis of codon usage patterns of the chloroplast genomes in the Poaceae family

Y Zhang, X Nie, X Jia, C Zhao, SS Biradar… - Australian Journal of …, 2012 - CSIRO Publishing
Codon usage patterns of 23 Poaceae chloroplast genomes were analysed in this study.
Neutrality analysis indicated that the codon usage patterns have significant correlations with …

Comparative analysis of codon bias in the chloroplast genomes of theaceae species

Z Wang, Q Cai, Y Wang, M Li, C Wang, Z Wang… - Frontiers in …, 2022 - frontiersin.org
Theaceae species are dicotyledonous angiosperms with extremely high ornamental and
economic value. The chloroplast genome is traditionally used to study species evolution …

Comparative Analysis on the Codon Usage Pattern of the Chloroplast Genomes in Malus Species

G Li, L Zhang, P Xue, M Zhu - Biochemical Genetics, 2023 - Springer
Codon usage bias of coding sequences has been usually used for exploring the
evolutionary factors that affect the variation of genes. We took 20 chloroplast genomes of …

[HTML][HTML] Analysis of codon usage patterns in Bupleurum falcatum chloroplast genome

M Gao, X Huo, L Lu, M Liu, G Zhang - Chinese Herbal Medicines, 2023 - Elsevier
Objective In order to distinguish the traditional Chinese medicine Bupleurum falcatum and
its adulterants effectively and develop a better understanding of the factors affecting …

Analysis of codon usage bias of chloroplast genes in Oryza species: Codon usage of chloroplast genes in Oryza species

S Chakraborty, S Yengkhom, A Uddin - Planta, 2020 - Springer
Main conclusion The codon usage bias in chloroplast genes of Oryza species was low and
AT rich. The pattern of codon usage was different among Oryza species and mainly …

Codon usage profiling of chloroplast genome in Juglandaceae

Y Zeng, L Shen, S Chen, S Qu, N Hou - Forests, 2023 - mdpi.com
Juglandaceae (walnut) is made up of several economically and ecologically valuable tree
species. Chloroplasts, vitally important for plant growth, are also a rich source of genetic and …

Codon usage bias in chloroplast genes implicate adaptive evolution of four ginger species

Q Yang, C Xin, QS Xiao, YT Lin, L Li… - Frontiers in Plant …, 2023 - frontiersin.org
Codon usage bias (CUB) refers to different codons exhibiting varying frequencies of usage
in the genome. Studying CUB is crucial for understanding genome structure, function, and …

Analysis of synonymous codon usage in chloroplast genome of Populus alba

M Zhou, W Long, X Li - Journal of Forestry Research, 2008 - Springer
The pattern of codon usage in the chloroplast genome of Populus alba was investigated.
Correspondence analysis (a commonly used multivariate statistical approach) and method …