The accelerating pace of genome sequencing throughout the tree of life is driving the need
for improved unsupervised annotation of genome components such as transposable …

Background Sequencing technology and assembly algorithms have matured to the point
that high-quality de novo assembly is possible for large, repetitive genomes. Current …

Eukaryotic genomes contain large amount of repetitive DNA, most of which is derived from
transposable elements (TEs). Progress has been made to develop computational tools for …

Transposable elements (TEs) are major components of eukaryotic genomes and are
implicated in a range of evolutionary processes. Yet, TE annotation and characterization …

Transposable elements (TEs) are mobile, repetitive DNA sequences that are almost
ubiquitous in prokaryotic and eukaryotic genomes. They have a large impact on genome …

A substantial proportion of the genome of many species is derived from transposable
elements (TEs). Moreover, through various self-copying mechanisms, TEs continue to …

The contribution of transposable elements (TEs) to genome structure and evolution as well
as their impact on genome sequencing, assembly, annotation and alignment has generated …

Transposable elements (TEs) are mobile, repetitive sequences that make up significant
fractions of metazoan genomes. Despite their near ubiquity and importance in genome and …

Transposable elements (TEs) are mobile genetic elements with the ability to replicate
themselves throughout the host genome. In some taxa TEs reach copy numbers in hundreds …

High-throughput DNA sequencing technologies have revolutionized genomic analysis,
including the de novo assembly of whole genomes. Nevertheless, assembly of complex …