New insights into Hoogsteen base pairs in DNA duplexes from a structure-based survey
Hoogsteen (HG) base pairs (bps) provide an alternative pairing geometry to Watson–Crick
(WC) bps and can play unique functional roles in duplex DNA. Here, we use structural …
(WC) bps and can play unique functional roles in duplex DNA. Here, we use structural …
Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics
HS Alvey, FL Gottardo, EN Nikolova… - Nature …, 2014 - nature.com
Hoogsteen (HG) base pairing involves a 180° rotation of the purine base relative to Watson–
Crick (WC) base pairing within DNA duplexes, creating alternative DNA conformations that …
Crick (WC) base pairing within DNA duplexes, creating alternative DNA conformations that …
Revealing AT and GC Hoogsteen base pairs in stressed protein-bound duplex DNA
Watson–Crick base pairs (bps) are the fundamental unit of genetic information and the
building blocks of the DNA double helix. However, AT and GC can also form alternative …
building blocks of the DNA double helix. However, AT and GC can also form alternative …
A historical account of hoogsteen base‐pairs in duplex DNA
EN Nikolova, H Zhou, FL Gottardo, HS Alvey… - …, 2013 - Wiley Online Library
In 1957, a unique pattern of hydrogen bonding between N3 and O4 on uracil and N7 and N6
on adenine was proposed to explain how poly (rU) strands can associate with poly (rA)‐poly …
on adenine was proposed to explain how poly (rU) strands can associate with poly (rA)‐poly …
Probing transient Hoogsteen hydrogen bonds in canonical duplex DNA using NMR relaxation dispersion and single-atom substitution
EN Nikolova, FL Gottardo… - Journal of the American …, 2012 - ACS Publications
Nucleic acids transiently morph into alternative conformations that can be difficult to
characterize at the atomic level by conventional methods because they exist for too little time …
characterize at the atomic level by conventional methods because they exist for too little time …
Atomic structures of excited state A–T Hoogsteen base pairs in duplex DNA by combining NMR relaxation dispersion, mutagenesis, and chemical shift calculations
NMR relaxation dispersion studies indicate that in canonical duplex DNA, Watson–Crick
base pairs (bps) exist in dynamic equilibrium with short-lived low abundance excited state …
base pairs (bps) exist in dynamic equilibrium with short-lived low abundance excited state …
Free energy landscape and transition pathways from Watson–Crick to Hoogsteen base pairing in free duplex DNA
C Yang, E Kim, Y Pak - Nucleic acids research, 2015 - academic.oup.com
Houghton (HG) base pairing plays a central role in the DNA binding of proteins and small
ligands. Probing detailed transition mechanism from Watson–Crick (WC) to HG base pair …
ligands. Probing detailed transition mechanism from Watson–Crick (WC) to HG base pair …
Transient Hoogsteen base pairs in canonical duplex DNA
EN Nikolova, E Kim, AA Wise, PJ O'Brien, I Andricioaei… - Nature, 2011 - nature.com
Sequence-directed variations in the canonical DNA double helix structure that retain Watson–
Crick base-pairing have important roles in DNA recognition, topology and nucleosome …
Crick base-pairing have important roles in DNA recognition, topology and nucleosome …
Sequence dependence of transient Hoogsteen base pairing in DNA
A Pérez de Alba Ortíz, J Vreede… - PLoS computational …, 2022 - journals.plos.org
Hoogsteen (HG) base pairing is characterized by a 180° rotation of the purine base with
respect to the Watson-Crick-Franklin (WCF) motif. Recently, it has been found that both …
respect to the Watson-Crick-Franklin (WCF) motif. Recently, it has been found that both …
Characterizing the protonation state of cytosine in transient G· C Hoogsteen base pairs in duplex DNA
G· C Hoogsteen base pairs can form transiently in duplex DNA and play important roles in
DNA recognition, replication, and repair. G· C Hoogsteen base pairs are thought to be …
DNA recognition, replication, and repair. G· C Hoogsteen base pairs are thought to be …