[HTML][HTML] Fast, accurate local ancestry inference with FLARE

SR Browning, RK Waples, BL Browning - The American Journal of Human …, 2023 - cell.com
Local ancestry is the source ancestry at each point in the genome of an admixed individual.
Inferred local ancestry is used for admixture mapping and population genetic analyses. We …

[HTML][HTML] RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference

BK Maples, S Gravel, EE Kenny… - The American Journal of …, 2013 - cell.com
Local-ancestry inference is an important step in the genetic analysis of fully sequenced
human genomes. Current methods can only detect continental-level ancestry (ie, European …

[HTML][HTML] Enhanced methods for local ancestry assignment in sequenced admixed individuals

R Brown, B Pasaniuc - PLoS computational biology, 2014 - journals.plos.org
Inferring the ancestry at each locus in the genome of recently admixed individuals (eg,
Latino Americans) plays a major role in medical and population genetic inferences, ranging …

[HTML][HTML] Comparing local ancestry inference models in populations of two-and three-way admixture

R Schubert, A Andaleon, HE Wheeler - PeerJ, 2020 - peerj.com
Local ancestry estimation infers the regional ancestral origin of chromosomal segments in
admixed populations using reference populations and a variety of statistical models …

Fast and accurate inference of local ancestry in Latino populations

Y Baran, B Pasaniuc, S Sankararaman… - …, 2012 - academic.oup.com
Motivation: It is becoming increasingly evident that the analysis of genotype data from
recently admixed populations is providing important insights into medical genetics and …

[HTML][HTML] Estimating local ancestry in admixed populations

S Sankararaman, S Sridhar, G Kimmel… - The American Journal of …, 2008 - cell.com
Large-scale genotyping of SNPs has shown a great promise in identifying markers that
could be linked to diseases. One of the major obstacles involved in performing these studies …

Loter: a software package to infer local ancestry for a wide range of species

T Dias-Alves, J Mairal, MGB Blum - Molecular biology and …, 2018 - academic.oup.com
Admixture between populations provides opportunity to study biological adaptation and
phenotypic variation. Admixture studies rely on local ancestry inference for admixed …

Fast model-based estimation of ancestry in unrelated individuals

DH Alexander, J Novembre, K Lange - Genome research, 2009 - genome.cshlp.org
Population stratification has long been recognized as a confounding factor in genetic
association studies. Estimated ancestries, derived from multi-locus genotype data, can be …

[HTML][HTML] Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

DH Alexander, K Lange - BMC bioinformatics, 2011 - Springer
Background The estimation of individual ancestry from genetic data has become essential to
applied population genetics and genetic epidemiology. Software programs for calculating …

[HTML][HTML] Fast individual ancestry inference from DNA sequence data leveraging allele frequencies for multiple populations

V Bansal, O Libiger - BMC bioinformatics, 2015 - Springer
Background Estimation of individual ancestry from genetic data is useful for the analysis of
disease association studies, understanding human population history and interpreting …