Comparative effect of allopolyploidy on transposable element composition and gene expression between Gossypium hirsutum and its two diploid progenitors

H Cheng, G Sun, S He, W Gong, Z Peng… - Journal of integrative …, 2019 - Wiley Online Library
An allopolyploidization event formed allotetraploid Gossypium species from an A‐genome
diploid species and a D‐genome diploid species. To explore the responses of transposable …

[HTML][HTML] Actively Expressed Intergenic Genes Generated by Transposable Element Insertions in Gossypium hirsutum Cotton

Y Guan, M Zhou, C Zhang, Z Han, Y Zhang, Z Wu… - Plants, 2024 - ncbi.nlm.nih.gov
The genomes and annotated genes of allotetraploid cotton Gossypium hirsutum have been
extensively studied in recent years. However, the expression, regulation, and evolution of …

The history and disposition of transposable elements in polyploid Gossypium

G Hu, JS Hawkins, CE Grover, JF Wendel - Genome, 2010 - cdnsciencepub.com
Transposable elements (TEs) are a major component of plant genomes. It is of particular
interest to explore the potential activation of TE proliferation, especially in hybrids and …

Intergenomic gene transfer in diploid and allopolyploid Gossypium

N Zhao, CE Grover, Z Chen, JF Wendel, J Hua - BMC Plant Biology, 2019 - Springer
Background Intergenomic gene transfer (IGT) between nuclear and organellar genomes is a
common phenomenon during plant evolution. Gossypium is a useful model to evaluate the …

Duplicate gene expression in allopolyploid Gossypiumreveals two temporally distinct phases of expression evolution

L Flagel, J Udall, D Nettleton, J Wendel - BMC biology, 2008 - Springer
Background Polyploidy has played a prominent role in shaping the genomic architecture of
the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species …

Little evidence for homoeologous gene conversion and homoeologous exchange events in Gossypium allopolyploids

JL Conover, CE Grover, J Sharbrough… - American Journal of …, 2024 - Wiley Online Library
Premise A complicating factor in analyzing allopolyploid genomes is the possibility of
physical interactions between homoeologous chromosomes during meiosis, resulting in …

A Cluster of Recently Inserted Transposable Elements Associated with siRNAs in Gossypium raimondii

L Gong, RE Masonbrink, CE Grover… - The plant …, 2015 - Wiley Online Library
Stabilization of transposable element (TE) copy number involves the biosynthesis of short
silencing RNAs (siRNAs) and further initialization of siRNA‐mediated TE silencing. To gain …

Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium

JS Hawkins, G Hu, RA Rapp, JL Grafenberg… - …, 2008 - cdnsciencepub.com
Transposable elements contribute significantly to plant genome evolution in myriad ways,
ranging from local insertional mutations to global effects exerted on genome size through …

Extensive and Biased Intergenomic Nonreciprocal DNA Exchanges Shaped a Nascent Polyploid Genome, Gossypium (Cotton)

H Guo, X Wang, H Gundlach, KFX Mayer… - Genetics, 2014 - academic.oup.com
Genome duplication is thought to be central to the evolution of morphological complexity,
and some polyploids enjoy a variety of capabilities that transgress those of their diploid …

LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization

T Zhao, X Tao, S Feng, L Wang, H Hong, W Ma… - Genome biology, 2018 - Springer
Background Interspecific hybridization and whole genome duplication are driving forces of
genomic and organism diversification. But the effect of interspecific hybridization and whole …