Population differences in Chinook salmon (Oncorhynchus tshawytscha) DNA methylation: Genetic drift and environmental factors

CJ Venney, BJG Sutherland, TD Beacham… - Ecology and …, 2021 - Wiley Online Library
Local adaptation and phenotypic differences among populations have been reported in
many species, though most studies focus on either neutral or adaptive genetic …

Rearing environment affects the genetic architecture and plasticity of DNA methylation in Chinook salmon

CJ Venney, KW Wellband, DD Heath - Heredity, 2021 - nature.com
Genetic architecture and phenotypic plasticity are important considerations when studying
trait variation within and among populations. Since environmental change can induce shifts …

Inbreeding effects on gene‐specific DNA methylation among tissues of Chinook salmon

CJ Venney, ML Johansson, DD Heath - Molecular Ecology, 2016 - Wiley Online Library
Inbreeding depression is the loss of fitness resulting from the mating of genetically related
individuals. Traditionally, the study of inbreeding depression focused on genetic effects …

Contrasting DNA methylation responses of inbred fish lines to different rearing environments

WM Berbel-Filho, D Rodríguez-Barreto, N Berry… - Epigenetics, 2019 - Taylor & Francis
Epigenetic mechanisms generate plastic phenotypes that can become locally adapted
across environments. Disentangling genomic from epigenomic variation is challenging in …

Temporal Dynamics of DNA Methylation Patterns in Response to Rearing Juvenile Steelhead (Oncorhynchus mykiss) in a Hatchery versus Simulated Stream …

MR Gavery, KM Nichols, BA Berejikian, CP Tatara… - Genes, 2019 - mdpi.com
Genetic selection is often implicated as the underlying cause of heritable phenotypic
differences between hatchery and wild populations of steelhead trout (Oncorhynchus …

DNA methylation profiles suggest intergenerational transfer of maternal effects

CJ Venney, OP Love, EJ Drown… - Molecular Biology and …, 2020 - academic.oup.com
The view of maternal effects (nongenetic maternal environmental influence on offspring
phenotype) has changed from one of distracting complications in evolutionary genetics to an …

Differential DNA methylation across environments has no effect on gene expression in the eastern oyster.

KM Johnson, KA Sirovy… - Journal of Animal …, 2022 - search.ebscohost.com
It has been hypothesized that environmentally induced changes to gene body methylation
could facilitate adaptive transgenerational responses to changing environments. We …

Location-dependent DNA methylation signatures in a clonal invasive crayfish

S Tönges, G Venkatesh, R Andriantsoa… - Frontiers in Cell and …, 2021 - frontiersin.org
DNA methylation is an important epigenetic modification that has been repeatedly implied in
organismal adaptation. However, many previous studies that have linked DNA methylation …

Environment-driven reprogramming of gamete DNA methylation occurs during maturation and is transmitted intergenerationally in Atlantic salmon

K Wellband, D Roth, T Linnansaari, RA Curry… - G3, 2021 - academic.oup.com
An epigenetic basis for transgenerational plasticity in animals is widely theorized, but
convincing empirical support is limited by taxa-specific differences in the presence and role …

Strong Parallel Differential Gene Expression Induced by Hatchery Rearing Weakly Associated with Methylation Signals in Adult Coho Salmon (O. kisutch)

M Leitwein, K Wellband, H Cayuela… - Genome Biology and …, 2022 - academic.oup.com
Human activities and resource exploitation led to a massive decline of wild salmonid
populations, consequently, numerous conservation programs have been developed to …