[HTML][HTML] Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique
Abstract Background The use of RNAseq to resolve the transcriptional organization of an
organism was established in recent years and also showed the complexity and dynamics of …
organism was established in recent years and also showed the complexity and dynamics of …
Quantitative bacterial transcriptomics with RNA-seq
JP Creecy, T Conway - Current opinion in microbiology, 2015 - Elsevier
Highlights•Annotation schema based upon operon architecture facilitates bacterial
transcriptome analysis.•RNA-sequence data pinpoint transcriptional features with single …
transcriptome analysis.•RNA-sequence data pinpoint transcriptional features with single …
The Corynebacterium glutamicum genome: features and impacts on biotechnological processes
M Ikeda, S Nakagawa - Applied microbiology and biotechnology, 2003 - Springer
Corynebacterium glutamicum has played a principal role in the progress of the amino acid
fermentation industry. The complete genome sequence of the representative wild-type strain …
fermentation industry. The complete genome sequence of the representative wild-type strain …
The transcriptional regulatory network of the amino acid producer Corynebacterium glutamicum
K Brinkrolf, I Brune, A Tauch - Journal of biotechnology, 2007 - Elsevier
The complete nucleotide sequence of the Corynebacterium glutamicum ATCC 13032
genome was previously determined and allowed the reliable prediction of 3002 protein …
genome was previously determined and allowed the reliable prediction of 3002 protein …
[PDF][PDF] Application of RNA-seq to reveal the transcript profile in bacteria
AC Pinto, HP Melo-Barbosa, A Miyoshi, A Silva… - Genet Mol …, 2011 - academia.edu
The large number of microbial genomes deposited in databanks has opened the door for in-
depth studies of organisms, including post-genomics investigations. Thanks to new …
depth studies of organisms, including post-genomics investigations. Thanks to new …
In-Depth Profiling of Lysine-Producing Corynebacterium glutamicum by Combined Analysis of the Transcriptome, Metabolome, and Fluxome
JO Kromer, O Sorgenfrei, K Klopprogge… - Journal of …, 2004 - Am Soc Microbiol
An in-depth analysis of the intracellular metabolite concentrations, metabolic fluxes, and
gene expression (metabolome, fluxome, and transcriptome, respectively) of lysine …
gene expression (metabolome, fluxome, and transcriptome, respectively) of lysine …
[HTML][HTML] Comparative analysis of Corynebacterium glutamicum genomes: a new perspective for the industrial production of amino acids
J Yang, S Yang - BMC genomics, 2017 - Springer
Background Corynebacterium glutamicum is a non-pathogenic bacterium widely used in
industrial amino acid production and metabolic engineering research. Although the genome …
industrial amino acid production and metabolic engineering research. Although the genome …
[HTML][HTML] How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
Background High-throughput sequencing of cDNA libraries (RNA-Seq) has proven to be a
highly effective approach for studying bacterial transcriptomes. A central challenge in …
highly effective approach for studying bacterial transcriptomes. A central challenge in …
Emerging Corynebacterium glutamicum systems biology
Corynebacterium glutamicum is widely used for the biotechnological production of amino
acids. Amino acid producing strains have been improved classically by mutagenesis and …
acids. Amino acid producing strains have been improved classically by mutagenesis and …
[HTML][HTML] CoryneRegNet 4.0–A reference database for corynebacterial gene regulatory networks
J Baumbach - BMC bioinformatics, 2007 - Springer
Background Detailed information on DNA-binding transcription factors (the key players in
the regulation of gene expression) and on transcriptional regulatory interactions of …
the regulation of gene expression) and on transcriptional regulatory interactions of …