[HTML][HTML] Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique

K Pfeifer-Sancar, A Mentz, C Rückert, J Kalinowski - BMC genomics, 2013 - Springer
Abstract Background The use of RNAseq to resolve the transcriptional organization of an
organism was established in recent years and also showed the complexity and dynamics of …

Quantitative bacterial transcriptomics with RNA-seq

JP Creecy, T Conway - Current opinion in microbiology, 2015 - Elsevier
Highlights•Annotation schema based upon operon architecture facilitates bacterial
transcriptome analysis.•RNA-sequence data pinpoint transcriptional features with single …

The Corynebacterium glutamicum genome: features and impacts on biotechnological processes

M Ikeda, S Nakagawa - Applied microbiology and biotechnology, 2003 - Springer
Corynebacterium glutamicum has played a principal role in the progress of the amino acid
fermentation industry. The complete genome sequence of the representative wild-type strain …

The transcriptional regulatory network of the amino acid producer Corynebacterium glutamicum

K Brinkrolf, I Brune, A Tauch - Journal of biotechnology, 2007 - Elsevier
The complete nucleotide sequence of the Corynebacterium glutamicum ATCC 13032
genome was previously determined and allowed the reliable prediction of 3002 protein …

[PDF][PDF] Application of RNA-seq to reveal the transcript profile in bacteria

AC Pinto, HP Melo-Barbosa, A Miyoshi, A Silva… - Genet Mol …, 2011 - academia.edu
The large number of microbial genomes deposited in databanks has opened the door for in-
depth studies of organisms, including post-genomics investigations. Thanks to new …

In-Depth Profiling of Lysine-Producing Corynebacterium glutamicum by Combined Analysis of the Transcriptome, Metabolome, and Fluxome

JO Kromer, O Sorgenfrei, K Klopprogge… - Journal of …, 2004 - Am Soc Microbiol
An in-depth analysis of the intracellular metabolite concentrations, metabolic fluxes, and
gene expression (metabolome, fluxome, and transcriptome, respectively) of lysine …

[HTML][HTML] Comparative analysis of Corynebacterium glutamicum genomes: a new perspective for the industrial production of amino acids

J Yang, S Yang - BMC genomics, 2017 - Springer
Background Corynebacterium glutamicum is a non-pathogenic bacterium widely used in
industrial amino acid production and metabolic engineering research. Although the genome …

[HTML][HTML] How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

BJ Haas, M Chin, C Nusbaum, BW Birren, J Livny - BMC genomics, 2012 - Springer
Background High-throughput sequencing of cDNA libraries (RNA-Seq) has proven to be a
highly effective approach for studying bacterial transcriptomes. A central challenge in …

Emerging Corynebacterium glutamicum systems biology

VF Wendisch, M Bott, J Kalinowski, M Oldiges… - Journal of …, 2006 - Elsevier
Corynebacterium glutamicum is widely used for the biotechnological production of amino
acids. Amino acid producing strains have been improved classically by mutagenesis and …

[HTML][HTML] CoryneRegNet 4.0–A reference database for corynebacterial gene regulatory networks

J Baumbach - BMC bioinformatics, 2007 - Springer
Background Detailed information on DNA-binding transcription factors (the key players in
the regulation of gene expression) and on transcriptional regulatory interactions of …