scRNA‐seq data analysis method to improve analysis performance

J Lu, Y Sheng, W Qian, M Pan, X Zhao… - IET …, 2023 - Wiley Online Library
With the development of single‐cell RNA sequencing technology (scRNA‐seq), we have the
ability to study biological questions at the level of the individual cell transcriptome …

[HTML][HTML] Practical bioinformatics pipelines for single-cell RNA-seq data analysis

J He, L Lin, J Chen - Biophysics Reports, 2022 - ncbi.nlm.nih.gov
Single-cell RNA sequencing (scRNA-seq) is a revolutionary tool to explore cells. With an
increasing number of scRNA-seq data analysis tools that have been developed, it is …

Single-cell RNA-seq technologies and related computational data analysis

G Chen, B Ning, T Shi - Frontiers in genetics, 2019 - frontiersin.org
Single-cell RNA sequencing (scRNA-seq) technologies allow the dissection of gene
expression at single-cell resolution, which greatly revolutionizes transcriptomic studies. A …

Single-cell RNA sequencing analysis: a step-by-step overview

S Slovin, A Carissimo, F Panariello, A Grimaldi… - RNA bioinformatics, 2021 - Springer
Thanks to innovative sample-preparation and sequencing technologies, gene expression in
individual cells can now be measured for thousands of cells in a single experiment. Since its …

Comparative analysis of NovaSeq 6000 and MGISEQ 2000 single‐cell RNA sequencing data

W Chen, M Wahiduzzaman, Q Li, Y Li… - Quantitative …, 2022 - Wiley Online Library
Background Single‐cell RNA sequencing (scRNA‐seq) technology is now becoming a
widely applied method of transcriptome exploration that helps to reveal cell‐type …

ScRNAPip: A systematic and dynamic pipeline for single‐cell RNA sequencing analysis

L Xu, J Zhang, Y He, Q Yang, T Mu, Q Guo, Y Li, T Tong… - Imeta, 2023 - Wiley Online Library
With the advancement of sequencing technology, cell separation, and whole‐genome
amplification techniques, single cell technology for genome sequencing is emerging …

Quantitative single-cell transcriptomics

C Ziegenhain, B Vieth, S Parekh… - Briefings in …, 2018 - academic.oup.com
Single-cell RNA sequencing (scRNA-seq) is currently transforming our understanding of
biology, as it is a powerful tool to resolve cellular heterogeneity and molecular networks …

A guide to single‐cell RNA sequencing analysis using web‐based tools for non‐bioinformatician

S Yarlagadda, TD Giorgio - The FEBS Journal, 2024 - Wiley Online Library
Single‐cell RNA sequencing (scRNA‐seq) is a technique that has proven to be a powerful
tool for a wide range of fields and research studies. However, scRNA‐seq data analysis has …

scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis

JJ Cai - 2020 - academic.oup.com
Motivation Single-cell RNA sequencing (scRNA-seq) technology has revolutionized the way
research is done in biomedical sciences. It provides an unprecedented level of resolution …

WASP: a versatile, web-accessible single cell RNA-Seq processing platform

A Hoek, K Maibach, E Özmen, AI Vazquez-Armendariz… - BMC genomics, 2021 - Springer
Background The technology of single cell RNA sequencing (scRNA-seq) has gained
massively in popularity as it allows unprecedented insights into cellular heterogeneity as …