[HTML][HTML] Ancient pathogen genomics as an emerging tool for infectious disease research

MA Spyrou, KI Bos, A Herbig, J Krause - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, a genomics revolution, made possible through the development of
high-throughput sequencing, has triggered considerable progress in the study of ancient …

[HTML][HTML] The recovery, interpretation and use of ancient pathogen genomes

S Duchêne, SYW Ho, AG Carmichael, EC Holmes… - Current Biology, 2020 - cell.com
The ability to sequence genomes from ancient biological material has provided a rich source
of information for evolutionary biology and engaged considerable public interest. Although …

Paleomicrobiology: diagnosis and evolution of ancient pathogens

KI Bos, D Kühnert, A Herbig… - Annual Review of …, 2019 - annualreviews.org
The last century has witnessed progress in the study of ancient infectious disease from
purely medical descriptions of past ailments to dynamic interpretations of past population …

Molecular analysis of ancient microbial infections

AR Zink, U Reischl, H Wolf… - FEMS Microbiology …, 2002 - academic.oup.com
The detection of ancient microbial DNA offers a new approach for the study of infectious
diseases, their occurrence, frequency and host–pathogen interaction in historic times and …

[HTML][HTML] A robust framework for microbial archaeology

C Warinner, A Herbig, A Mann… - Annual review of …, 2017 - annualreviews.org
Microbial archaeology is flourishing in the era of high-throughput sequencing, revealing the
agents behind devastating historical plagues, identifying the cryptic movements of …

[HTML][HTML] HOPS: automated detection and authentication of pathogen DNA in archaeological remains

R Hübler, FM Key, C Warinner, KI Bos, J Krause… - Genome Biology, 2019 - Springer
High-throughput DNA sequencing enables large-scale metagenomic analyses of complex
biological systems. Such analyses are not restricted to present-day samples and can also be …

[HTML][HTML] Clinical detection and characterization of bacterial pathogens in the genomics era

PE Fournier, G Dubourg, D Raoult - Genome medicine, 2014 - Springer
The availability of genome sequences obtained using next-generation sequencing (NGS)
has revolutionized the field of infectious diseases. Indeed, more than 38,000 bacterial and …

[HTML][HTML] Bacterial epidemiology and biology-lessons from genome sequencing

J Parkhill, BW Wren - Genome biology, 2011 - Springer
Bacterial epidemiology and biology - lessons from genome sequencing | Genome Biology
Skip to main content SpringerLink Account Menu Find a journal Publish with us Track your …

Microbial genome analysis: insights into virulence, host adaptation and evolution

BW Wren - Nature Reviews Genetics, 2000 - nature.com
Genome analysis of microbial pathogens has provided unique insights into their virulence,
host adaptation and evolution. Common themes have emerged, including lateral gene …

[HTML][HTML] Epidemiologic data and pathogen genome sequences: a powerful synergy for public health

YH Grad, M Lipsitch - Genome biology, 2014 - Springer
Epidemiologists aim to inform the design of public health interventions with evidence on the
evolution, emergence and spread of infectious diseases. Sequencing of pathogen genomes …