Widespread introgression across a phylogeny of 155 Drosophila genomes

A Suvorov, BY Kim, J Wang, EE Armstrong, D Peede… - Current Biology, 2022 - cell.com
Genome-scale sequence data have invigorated the study of hybridization and introgression,
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …

The Genomics of Speciation in Drosophila: Diversity, Divergence, and Introgression Estimated Using Low-Coverage Genome Sequencing

RJ Kulathinal, LS Stevison, MAF Noor - PLoS genetics, 2009 - journals.plos.org
In nature, closely related species may hybridize while still retaining their distinctive identities.
Chromosomal regions that experience reduced recombination in hybrids, such as within …

Fine scale mapping of genomic introgressions within the Drosophila yakuba clade

DA Turissini, DR Matute - PLoS genetics, 2017 - journals.plos.org
The process of speciation involves populations diverging over time until they are genetically
and reproductively isolated. Hybridization between nascent species was long thought to …

Genome sequencing reveals complex speciation in the Drosophila simulans clade

D Garrigan, SB Kingan, AJ Geneva… - Genome …, 2012 - genome.cshlp.org
The three species of the Drosophila simulans clade—the cosmopolitan species, D.
simulans, and the two island endemic species, D. mauritiana and D. sechellia—are …

Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence

RJ Kulathinal, SM Bennett… - Proceedings of the …, 2008 - National Acad Sciences
Regional rates of recombination often correlate with levels of nucleotide diversity, and either
selective or neutral hypotheses can explain this relationship. Regional recombination rates …

Divergence Between the Drosophila pseudoobscura and D. persimilis Genome Sequences in Relation to Chromosomal Inversions

MAF Noor, DA Garfield, SW Schaeffer, CA Machado - Genetics, 2007 - academic.oup.com
As whole-genome sequence assemblies accumulate, a challenge is to determine how these
can be used to address fundamental evolutionary questions, such as inferring the process of …

The Mosaic Ancestry of the Drosophila Genetic Reference Panel and the D. melanogaster Reference Genome Reveals a Network of Epistatic Fitness Interactions

JE Pool - Molecular biology and evolution, 2015 - academic.oup.com
Abstract North American populations of Drosophila melanogaster derive from both
European and African source populations, but despite their importance for genetic research …

Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

DA Pollard, VN Iyer, AM Moses, MB Eisen - PLoS genetics, 2006 - journals.plos.org
The phylogenetic relationship of the now fully sequenced species Drosophila erecta and D.
yakuba with respect to the D. melanogaster species complex has been a subject of …

Natural selection shapes variation in genome-wide recombination rate in Drosophila pseudoobscura

K Samuk, B Manzano-Winkler, KR Ritz, MAF Noor - Current Biology, 2020 - cell.com
While recombination is widely recognized to be a key modulator of numerous evolutionary
phenomena, we have a poor understanding of how recombination rate itself varies and …

Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia

DR Schrider, J Ayroles, DR Matute, AD Kern - PLoS genetics, 2018 - journals.plos.org
Hybridization and gene flow between species appears to be common. Even though it is
clear that hybridization is widespread across all surveyed taxonomic groups, the magnitude …