Re-evaluating prokaryotic species

D Gevers, FM Cohan, JG Lawrence, BG Spratt… - Nature Reviews …, 2005 - nature.com
There is no widely accepted concept of species for prokaryotes, and assignment of isolates
to species is based on measures of phenotypic or genome similarity. The current methods …

Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead

KT Konstantinidis, JM Tiedje - Current opinion in microbiology, 2007 - Elsevier
Advancing prokaryotic taxonomy constitutes a contemporary academic challenge as well as
practical necessity. Genome sequencing has greatly facilitated the evaluation of the current …

[HTML][HTML] Microbial systematics and taxonomy: relevance for a microbial commons

ERB Moore, SA Mihaylova, P Vandamme… - Research in …, 2010 - Elsevier
The issues of microbial taxonomy and potential interactions with a microbial commons are
discussed, with emphasis on three components: characterization, classification and …

[HTML][HTML] Advantages and limitations of genomics in prokaryotic taxonomy

E Sentausa, PE Fournier - Clinical Microbiology and Infection, 2013 - Elsevier
Taxonomic classification is an important field of microbiology, as it enables scientists to
identify prokaryotes worldwide. Although the current classification system is still based on …

Prokaryotic taxonomy and nomenclature in the age of big sequence data

P Hugenholtz, M Chuvochina, A Oren… - the ISME …, 2021 - academic.oup.com
The classification of life forms into a hierarchical system (taxonomy) and the application of
names to this hierarchy (nomenclature) is at a turning point in microbiology. The …

The species concept for prokaryotes

R Rosselló-Mora, R Amann - FEMS microbiology reviews, 2001 - academic.oup.com
The species concept is a recurrent controversial issue that preoccupies philosophers as well
as biologists of all disciplines. Prokaryotic species concept has its own history and results …

Genomic insights that advance the species definition for prokaryotes

KT Konstantinidis, JM Tiedje - Proceedings of the National …, 2005 - National Acad Sciences
To help advance the species definition for prokaryotes, we have compared the gene content
of 70 closely related and fully sequenced bacterial genomes to identify whether species …

Accurate and universal delineation of prokaryotic species

DR Mende, S Sunagawa, G Zeller, P Bork - Nature methods, 2013 - nature.com
The exponentially increasing number of sequenced genomes necessitates fast, accurate,
universally applicable and automated approaches for the delineation of prokaryotic species …

A natural species concept for prokaryotes

DM Ward - Current opinion in microbiology, 1998 - Elsevier
Direct molecular analyses of natural microbial populations reveal patterns that should
compel microbiologists to adopt a more natural species concept that has been known to …

What are bacterial species?

FM Cohan - Annual Reviews in Microbiology, 2002 - annualreviews.org
▪ Abstract Bacterial systematics has not yet reached a consensus for defining the
fundamental unit of biological diversity, the species. The past half-century of bacterial …