[PDF][PDF] Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays

A Chen, S Liao, M Cheng, K Ma, L Wu, Y Lai, X Qiu… - Cell, 2022 - cell.com
Spatially resolved transcriptomic technologies are promising tools to study complex
biological processes such as mammalian embryogenesis. However, the imbalance between …

Embryo-scale, single-cell spatial transcriptomics

SR Srivatsan, MC Regier, E Barkan, JM Franks… - Science, 2021 - science.org
Spatial patterns of gene expression manifest at scales ranging from local (eg, cell-cell
interactions) to global (eg, body axis patterning). However, current spatial transcriptomics …

Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis

T Lohoff, S Ghazanfar, A Missarova, N Koulena… - Nature …, 2022 - nature.com
Molecular profiling of single cells has advanced our knowledge of the molecular basis of
development. However, current approaches mostly rely on dissociating cells from tissues …

A high-resolution anatomical atlas of the transcriptome in the mouse embryo

G Diez-Roux, S Banfi, M Sultan, L Geffers, S Anand… - PLoS …, 2011 - journals.plos.org
Ascertaining when and where genes are expressed is of crucial importance to
understanding or predicting the physiological role of genes and proteins and how they …

[PDF][PDF] Spatially resolved epigenomic profiling of single cells in complex tissues

T Lu, CE Ang, X Zhuang - Cell, 2022 - cell.com
The recent development of spatial omics methods has enabled single-cell profiling of the
transcriptome and 3D genome organization with high spatial resolution. Expanding the …

Advances and challenges in spatial transcriptomics for developmental biology

K Choe, U Pak, Y Pang, W Hao, X Yang - Biomolecules, 2023 - mdpi.com
Development from single cells to multicellular tissues and organs involves more than just the
exact replication of cells, which is known as differentiation. The primary focus of research …

Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis

A Sampath Kumar, L Tian, A Bolondi, AA Hernández… - Nature Genetics, 2023 - nature.com
Spatiotemporal orchestration of gene expression is required for proper embryonic
development. The use of single-cell technologies has begun to provide improved resolution …

Spatiotemporal transcriptome atlas reveals the regional specification of the developing human brain

Y Li, Z Li, C Wang, M Yang, Z He, F Wang, Y Zhang… - Cell, 2023 - cell.com
Different functional regions of brain are fundamental for basic neurophysiological activities.
However, the regional specification remains largely unexplored during human brain …

Molecularly defined and spatially resolved cell atlas of the whole mouse brain

M Zhang, X Pan, W Jung, AR Halpern, SW Eichhorn… - Nature, 2023 - nature.com
In mammalian brains, millions to billions of cells form complex interaction networks to enable
a wide range of functions. The enormous diversity and intricate organization of cells have …

[PDF][PDF] Changes in genome architecture and transcriptional dynamics progress independently of sensory experience during post-natal brain development

L Tan, W Ma, H Wu, Y Zheng, D Xing, R Chen, X Li… - Cell, 2021 - cell.com
Both transcription and three-dimensional (3D) architecture of the mammalian genome play
critical roles in neurodevelopment and its disorders. However, 3D genome structures of …