DIANA-microT 2023: including predicted targets of virally encoded miRNAs

S Tastsoglou, A Alexiou, D Karagkouni… - Nucleic acids …, 2023 - academic.oup.com
DIANA-microT-CDS is a state-of-the-art miRNA target prediction algorithm catering the
scientific community since 2009. It is one of the first algorithms to predict miRNA binding …

miRWalk: an online resource for prediction of microRNA binding sites

C Sticht, C De La Torre, A Parveen, N Gretz - PloS one, 2018 - journals.plos.org
miRWalk is an open-source platform providing an intuitive interface that generates predicted
and validated miRNA-binding sites of known genes of human, mouse, rat, dog and cow. The …

DIANA-microT web server: elucidating microRNA functions through target prediction

M Maragkakis, M Reczko, VA Simossis… - Nucleic acids …, 2009 - academic.oup.com
Computational microRNA (miRNA) target prediction is one of the key means for deciphering
the role of miRNAs in development and disease. Here, we present the DIANA-microT web …

Common features of microRNA target prediction tools

SM Peterson, JA Thompson, ML Ufkin… - Frontiers in …, 2014 - frontiersin.org
The human genome encodes for over 1800 microRNAs (miRNAs), which are short non-
coding RNA molecules that function to regulate gene expression post-transcriptionally. Due …

DIANA-microT web server v5. 0: service integration into miRNA functional analysis workflows

MD Paraskevopoulou, G Georgakilas… - Nucleic acids …, 2013 - academic.oup.com
MicroRNAs (miRNAs) are small endogenous RNA molecules that regulate gene expression
through mRNA degradation and/or translation repression, affecting many biological …

Large-scale screens of miRNA-mRNA interactions unveiled that the 3′ UTR of a gene is targeted by multiple miRNAs

P Zhou, W Xu, X Peng, Z Luo, Q Xing, X Chen, C Hou… - PLoS …, 2013 - journals.plos.org
Animal microRNA (miRNA) target prediction is still a challenge, although many prediction
programs have been exploited. MiRNAs exert their function through partially binding the …

miRecords: an integrated resource for microRNA–target interactions

F Xiao, Z Zuo, G Cai, S Kang, X Gao… - Nucleic acids research, 2009 - academic.oup.com
MicroRNAs (miRNAs) are an important class of small noncoding RNAs capable of regulating
other genes' expression. Much progress has been made in computational target prediction …

DIANA miRPath v. 2.0: investigating the combinatorial effect of microRNAs in pathways

IS Vlachos, N Kostoulas, T Vergoulis… - Nucleic acids …, 2012 - academic.oup.com
MicroRNAs (miRNAs) are key regulators of diverse biological processes and their functional
analysis has been deemed central in many research pipelines. The new version of DIANA …

miRGate: a curated database of human, mouse and rat miRNA–mRNA targets

E Andres-Leon, D González Peña, G Gomez-Lopez… - Database, 2015 - academic.oup.com
MicroRNAs (miRNAs) are small non-coding elements involved in the post-transcriptional
down-regulation of gene expression through base pairing with messenger RNAs (mRNAs) …

miTarget: microRNA target gene prediction using a support vector machine

SK Kim, JW Nam, JK Rhee, WJ Lee, BT Zhang - BMC bioinformatics, 2006 - Springer
Background MicroRNAs (miRNAs) are small noncoding RNAs, which play significant roles
as posttranscriptional regulators. The functions of animal miRNAs are generally based on …