[HTML][HTML] Single-cell multi-omics and lineage tracing to dissect cell fate decision-making

L Haghverdi, LS Ludwig - Stem Cell Reports, 2023 - cell.com
The concept of cell fate relates to the future identity of a cell, and its daughters, which is
obtained via cell differentiation and division. Understanding, predicting, and manipulating …

Deciphering cell fate decision by integrated single-cell sequencing analysis

Sagar, D Grün - Annual review of biomedical data science, 2020 - annualreviews.org
Cellular differentiation is a common underlying feature of all multicellular organisms through
which naïve cells progressively become fate restricted and develop into mature cells with …

The evolving concept of cell identity in the single cell era

SA Morris - Development, 2019 - journals.biologists.com
Fueled by recent advances in single cell biology, we are moving away from qualitative and
undersampled assessments of cell identity, toward building quantitative, high-resolution cell …

Studying lineage decision-making in vitro: emerging concepts and novel tools

S Semrau, A van Oudenaarden - Annual review of cell and …, 2015 - annualreviews.org
Correct and timely lineage decisions are critical for normal embryonic development and
homeostasis of adult tissues. Therefore, the search for fundamental principles that underlie …

Creating lineage trajectory maps via integration of single‐cell RNA‐sequencing and lineage tracing: integrating transgenic lineage tracing and single‐cell RNA …

RB Fletcher, D Das, J Ngai - Bioessays, 2018 - Wiley Online Library
Mapping the paths that stem and progenitor cells take en route to differentiate and
elucidating the underlying molecular controls are key goals in developmental and stem cell …

Quantitative single-cell approaches to stem cell research

M Etzrodt, M Endele, T Schroeder - Cell stem cell, 2014 - cell.com
Understanding the molecular control of cell fates is central to stem cell research. Such
insight requires quantification of molecular and cellular behavior at the single-cell level …

[HTML][HTML] Novel insights into cell cycle regulation of cell fate determination

S Gao, F Liu - Journal of Zhejiang University. Science. B, 2019 - ncbi.nlm.nih.gov
The stem/progenitor cell has long been regarded as a central cell type in development,
homeostasis, and regeneration, largely owing to its robust self-renewal and multilineage …

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

M Plass, J Solana, FA Wolf, S Ayoub, A Misios… - Science, 2018 - science.org
INTRODUCTION Understanding the differentiation of stem cells into the vast amount of cell
types that form the human body is a central problem of basic and medical science. The …

Using single‐cell genomics to understand developmental processes and cell fate decisions

JA Griffiths, A Scialdone, JC Marioni - Molecular systems biology, 2018 - embopress.org
High‐throughput‐omics techniques have revolutionised biology, allowing for thorough and
unbiased characterisation of the molecular states of biological systems. However, cellular …

Revealing dynamic mechanisms of cell fate decisions from single-cell transcriptomic data

J Zhang, Q Nie, T Zhou - Frontiers in genetics, 2019 - frontiersin.org
Cell fate decisions play a pivotal role in development, but technologies for dissecting them
are limited. We developed a multifunction new method, Topographer, to construct a …