[HTML][HTML] An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome

R Wang, X You, C Zhang, H Fang, M Wang, F Zhang… - Genome Biology, 2022 - Springer
Background Ubiquitination is essential for many cellular processes in eukaryotes, including
26S proteasome-dependent protein degradation, cell cycle progression, transcriptional …

[PDF][PDF] OsELF3-2, an ortholog of Arabidopsis ELF3, interacts with the E3 ligase APIP6 and negatively regulates immunity against Magnaporthe oryzae in rice

Y Ning, X Shi, R Wang, J Fan, CH Park, C Zhang… - Molecular Plant, 2015 - cell.com
The ubiquitin proteasome system (UPS) is a highly regulated mechanism of intracellular
protein degradation in eukaryotes. The UPS comprises three key enzymes: ubiquitin …

Classification and interaction modes of 40 rice E2 ubiquitin-conjugating enzymes with 17 rice ARM-U-box E3 ubiquitin ligases

H Bae, WT Kim - Biochemical and biophysical research communications, 2014 - Elsevier
Rice, a monocot model crop, contains at least 48 putative E2 ubiquitin (Ub)-conjugating
enzymes. Based on homology comparisons with 40 Arabidopsis E2 proteins and 35 human …

[PDF][PDF] Classification, expression pattern, and E3 ligase activity assay of rice U-box-containing proteins

LR Zeng, CH Park, RC Venu, J Gough, GL Wang - Molecular Plant, 2008 - cell.com
Ubiquitin ligases play a central role in determining the specificity of the ubiquitination system
by selecting a myriad of appropriate candidate proteins for modification. The U-box is a …

[PDF][PDF] A layered defense strategy mediated by rice E3 ubiquitin ligases against diverse pathogens

Y Ning, R Wang, X Shi, X Zhou, GL Wang - Molecular Plant, 2016 - cell.com
The ubiquitin–proteasome system (UPS) is an important mechanism that plants use to
regulate protein turnover for growth, development, and responses to abiotic and biotic …

[HTML][HTML] E3Net: a system for exploring E3-mediated regulatory networks of cellular functions

Y Han, H Lee, JC Park, GS Yi - Molecular & cellular proteomics, 2012 - ASBMB
Ubiquitin-protein ligase (E3) is a key enzyme targeting specific substrates in diverse cellular
processes for ubiquitination and degradation. The existing findings of substrate specificity of …

Comprehensive analysis of the rice RING E3 ligase family reveals their functional diversity in response to abiotic stress

SDON Lim, JG Hwang, CG Jung… - DNA …, 2013 - academic.oup.com
A large number of really interesting new gene (RING) E3 ligases contribute to the post-
translational modification of target proteins during plant responses to environmental …

[HTML][HTML] Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin …

A Ramadan, K Nemoto, M Seki, K Shinozaki… - BMC plant biology, 2015 - Springer
Background Protein ubiquitination is a ubiquitous mechanism in eukaryotes. In Arabidopsis,
ubiquitin modification is mainly mediated by two ubiquitin activating enzymes (E1s), 37 …

[HTML][HTML] SCUD: Saccharomyces Cerevisiae Ubiquitination Database

WC Lee, M Lee, JW Jung, KP Kim, D Kim - BMC genomics, 2008 - Springer
Background Ubiquitination is an important post-translational modification involved in diverse
biological processes. Therefore, genomewide representation of the ubiquitination system for …

UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase–substrate interactions

Z Li, S Chen, JH Jhong, Y Pang, KY Huang, S Li… - Database, 2021 - academic.oup.com
Ubiquitination is an important post-translational modification, which controls protein turnover
by labeling malfunctional and redundant proteins for proteasomal degradation, and also …