[HTML][HTML] DNAmod: the DNA modification database
AJ Sood, C Viner, MM Hoffman - Journal of cheminformatics, 2019 - Springer
Covalent DNA modifications, such as 5-methylcytosine (5mC), are increasingly the focus of
numerous research programs. In eukaryotes, both 5mC and 5-hydroxymethylcytosine …
numerous research programs. In eukaryotes, both 5mC and 5-hydroxymethylcytosine …
Detection, structure and function of modified DNA bases
While some DNA base modifications such as 5-methylcytosine have been known and
studied for decades, recent discoveries of a number of other modified bases have stimulated …
studied for decades, recent discoveries of a number of other modified bases have stimulated …
Mapping and elucidating the function of modified bases in DNA
EA Raiber, R Hardisty, P van Delft… - Nature Reviews …, 2017 - nature.com
Chemically modified bases exist naturally in genomic DNA. Research into these bases has
been invigorated by the discovery of several modified bases in the mammalian genome, in …
been invigorated by the discovery of several modified bases in the mammalian genome, in …
Advances in genome-wide DNA methylation analysis
R Gupta, A Nagarajan, N Wajapeyee - Biotechniques, 2010 - Taylor & Francis
The covalent DNA modification of cytosine at position 5 (5-methylcytosine; 5mC) has
emerged as an important epigenetic mark most commonly present in the context of CpG …
emerged as an important epigenetic mark most commonly present in the context of CpG …
5-Hydroxymethylcytosine is a predominantly stable DNA modification
M Bachman, S Uribe-Lewis, X Yang, M Williams… - Nature …, 2014 - nature.com
Hydroxymethylcytosine (hmC) is an oxidation product of 5-methylcytosine which is present
in the deoxyribonucleic acid (DNA) of most mammalian cells. Reduction of hmC levels in …
in the deoxyribonucleic acid (DNA) of most mammalian cells. Reduction of hmC levels in …
DNA base flipping: a general mechanism for writing, reading, and erasing DNA modifications
S Hong, X Cheng - DNA methyltransferases-role and function, 2016 - Springer
The modification of DNA bases is a classic hallmark of epigenetics. Four forms of modified
cytosine—5-methylcytosine, 5-hydroxymethylcytosine, 5-formylcytosine, and 5 …
cytosine—5-methylcytosine, 5-hydroxymethylcytosine, 5-formylcytosine, and 5 …
[HTML][HTML] Natural, modified DNA bases
MK Bilyard, S Becker, S Balasubramanian - Current Opinion in Chemical …, 2020 - Elsevier
The four canonical bases that make up genomic DNA are subject to a variety of chemical
modifications in living systems. Recent years have witnessed the discovery of various new …
modifications in living systems. Recent years have witnessed the discovery of various new …
A chemical probe targets DNA 5-formylcytosine sites and inhibits TDG excision, polymerases bypass, and gene expression
L Xu, YC Chen, S Nakajima, J Chong, L Wang… - Chemical …, 2014 - pubs.rsc.org
Dynamic regulation and faithful maintenance of proper DNA methylation patterns are
essential for many cellular functions. 5-Formylcytosine (5fC), a newly discovered oxidized …
essential for many cellular functions. 5-Formylcytosine (5fC), a newly discovered oxidized …
[HTML][HTML] DNA modifications: function and applications in normal and disease States
VRB Liyanage, JS Jarmasz, N Murugeshan… - Biology, 2014 - mdpi.com
Epigenetics refers to a variety of processes that have heritable effects on gene expression
programs without changes in DNA sequence. Key players in epigenetic control are chemical …
programs without changes in DNA sequence. Key players in epigenetic control are chemical …
[HTML][HTML] Chemical methods for decoding cytosine modifications in DNA
MJ Booth, EA Raiber, S Balasubramanian - Chemical reviews, 2015 - ACS Publications
Genetic information is encoded by the four bases adenine (A), guanine (G), cytosine (C),
and thymine (T). Base pairing through hydrogen bonding between the cognate pairs AT and …
and thymine (T). Base pairing through hydrogen bonding between the cognate pairs AT and …