From pull-down data to protein interaction networks and complexes with biological relevance
Motivation: Recent improvements in high-throughput Mass Spectrometry (MS) technology
have expedited genome-wide discovery of protein–protein interactions by providing a …
have expedited genome-wide discovery of protein–protein interactions by providing a …
[HTML][HTML] Inferring protein-protein interaction networks from mass spectrometry-based proteomic approaches: a mini-review
Studying protein-protein interaction networks provide key evidence for the underlying
molecular mechanisms. Mass spectrometry-based proteomic approaches have been …
molecular mechanisms. Mass spectrometry-based proteomic approaches have been …
[HTML][HTML] Predicting co-complexed protein pairs using genomic and proteomic data integration
Background Identifying all protein-protein interactions in an organism is a major objective of
proteomics. A related goal is to know which protein pairs are present in the same protein …
proteomics. A related goal is to know which protein pairs are present in the same protein …
What do we learn from high-throughput protein interaction data?
The biological significance of protein interactions, their method of generation and reliability
is briefly reviewed. Protein interaction networks adopt a scale-free topology that explains …
is briefly reviewed. Protein interaction networks adopt a scale-free topology that explains …
Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments
AI Nesvizhskii - Proteomics, 2012 - Wiley Online Library
Analysis of protein interaction networks and protein complexes using affinity purification and
mass spectrometry (AP/MS) is among most commonly used and successful applications of …
mass spectrometry (AP/MS) is among most commonly used and successful applications of …
[HTML][HTML] Computational approaches for detecting protein complexes from protein interaction networks: a survey
Background Most proteins form macromolecular complexes to perform their biological
functions. However, experimentally determined protein complex data, especially of those …
functions. However, experimentally determined protein complex data, especially of those …
Computational analyses of high-throughput protein-protein interaction data
Y Chen, D Xu - Current protein and peptide science, 2003 - ingentaconnect.com
Protein-protein interactions play important roles in nearly all events that take place in a cell.
High-throughput experimental techniques enable the study of protein-protein interactions at …
High-throughput experimental techniques enable the study of protein-protein interactions at …
[HTML][HTML] Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry
RM Kaake, X Wang, L Huang - Molecular & cellular proteomics, 2010 - ASBMB
Protein-protein interactions are important for nearly all biological processes, and it is known
that aberrant protein-protein interactions can lead to human disease and cancer. Recent …
that aberrant protein-protein interactions can lead to human disease and cancer. Recent …
[HTML][HTML] Building protein-protein interaction networks with proteomics and informatics tools
ME Sardiu, MP Washburn - Journal of Biological Chemistry, 2011 - ASBMB
The systematic characterization of the whole interactomes of different model organisms has
revealed that the eukaryotic proteome is highly interconnected. Therefore, biological …
revealed that the eukaryotic proteome is highly interconnected. Therefore, biological …
[HTML][HTML] Large scale chemical cross-linking mass spectrometry perspectives
The spectacular heterogeneity of a complex protein mixture from biological samples
becomes even more difficult to tackle when one's attention is shifted towards different protein …
becomes even more difficult to tackle when one's attention is shifted towards different protein …