Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events
Studies of the macroevolutionary legacy of polyploidy are limited by an incomplete sampling
of these events across the tree of life. To better locate and understand these events, we …
of these events across the tree of life. To better locate and understand these events, we …
Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales
PREMISE OF STUDY: The carnivorous members of the large, hyperdiverse Caryophyllales
(eg, Venus flytrap, sundews, and Nepenthes pitcher plants) represent perhaps the oldest …
(eg, Venus flytrap, sundews, and Nepenthes pitcher plants) represent perhaps the oldest …
Next‐generation polyploid phylogenetics: Rapid resolution of hybrid polyploid complexes using PacBio single‐molecule sequencing
Difficulties in generating nuclear data for polyploids have impeded phylogenetic study of
these groups. We describe a high‐throughput protocol and an associated bioinformatics …
these groups. We describe a high‐throughput protocol and an associated bioinformatics …
Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayrose et al. (2011)
Background Throughout the past century, hybridization and polyploidization have variously
been viewed as drivers of biodiversity (eg Arnold, 1997) or evolutionary noise, unimportant …
been viewed as drivers of biodiversity (eg Arnold, 1997) or evolutionary noise, unimportant …
Polyploid phylogenetics
CJ Rothfels - New Phytologist, 2021 - Wiley Online Library
Polyploidy is a dominant feature of extant plant diversity. However, major research
questions, including whether polyploidy is important to long‐term evolution or is just …
questions, including whether polyploidy is important to long‐term evolution or is just …
Advances in the study of polyploidy since Plant speciation
Enormous strides have been made in the study of polyploidy over the last 20 yr. Here, we
highlight some of these discoveries and note where our understanding of polyploid …
highlight some of these discoveries and note where our understanding of polyploid …
Disparity, diversity, and duplications in the Caryophyllales
The role played by whole genome duplication (WGD) in plant evolution is actively debated.
WGD s have been associated with advantages such as superior colonization, various …
WGD s have been associated with advantages such as superior colonization, various …
Dissecting molecular evolution in the highly diverse plant clade Caryophyllales using transcriptome sequencing
Many phylogenomic studies based on transcriptomes have been limited to “single-copy”
genes due to methodological challenges in homology and orthology inferences. Only a …
genes due to methodological challenges in homology and orthology inferences. Only a …
Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltis et al. (2014)
The fate of polyploid lineages has been of long-standing interest to evolutionary biologists.
In our previous work (Mayrose et al., 2011a; reviewed in Arrigo & Barker, 2012), we used …
In our previous work (Mayrose et al., 2011a; reviewed in Arrigo & Barker, 2012), we used …
Double trouble: taxonomy and definitions of polyploidy
JJ Doyle, S Sherman-Broyles - New Phytologist, 2017 - JSTOR
Polyploidy has long been recognized as a key process in plant evolution and it is the subject
of a plethora of reviews (for just two recent examples, see Wendel (2015) and Soltis et …
of a plethora of reviews (for just two recent examples, see Wendel (2015) and Soltis et …