Expanding interactome analyses beyond model eukaryotes
Interactome analyses have traditionally been applied to yeast, human and other model
organisms due to the availability of protein–protein interaction data for these species …
organisms due to the availability of protein–protein interaction data for these species …
Building and analyzing protein interactome networks by cross-species comparisons
Background A genomic catalogue of protein-protein interactions is a rich source of
information, particularly for exploring the relationships between proteins. Numerous systems …
information, particularly for exploring the relationships between proteins. Numerous systems …
New insights into protein-protein interaction data lead to increased estimates of the S. cerevisiae interactome size
L Sambourg, N Thierry-Mieg - BMC bioinformatics, 2010 - Springer
Background As protein interactions mediate most cellular mechanisms, protein-protein
interaction networks are essential in the study of cellular processes. Consequently, several …
interaction networks are essential in the study of cellular processes. Consequently, several …
Assessing reliability of protein-protein interactions by integrative analysis of data in model organisms
Background Protein-protein interactions play vital roles in nearly all cellular processes and
are involved in the construction of biological pathways such as metabolic and signal …
are involved in the construction of biological pathways such as metabolic and signal …
Inferring interaction networks from multi-omics data
A major goal in systems biology is a comprehensive description of the entirety of all complex
interactions between different types of biomolecules—also referred to as the interactome …
interactions between different types of biomolecules—also referred to as the interactome …
Protein–protein interactions more conserved within species than across species
S Mika, B Rost - PLoS computational biology, 2006 - journals.plos.org
Experimental high-throughput studies of protein–protein interactions are beginning to
provide enough data for comprehensive computational studies. Today, about ten large data …
provide enough data for comprehensive computational studies. Today, about ten large data …
Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS
E Rodgers-Melnick, M Culp, SP DiFazio - BMC genomics, 2013 - Springer
Background The large-scale identification of physical protein-protein interactions (PPIs) is
an important step toward understanding how biological networks evolve and generate …
an important step toward understanding how biological networks evolve and generate …
Complementing the eukaryotic protein interactome
Protein interaction networks are important for the understanding of regulatory mechanisms,
for the explanation of experimental data and for the prediction of protein functions …
for the explanation of experimental data and for the prediction of protein functions …
Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions
Background In the post-genomic era various functional genomics, proteomics and
computational techniques have been developed to elucidate the protein interaction network …
computational techniques have been developed to elucidate the protein interaction network …
Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information
CS Pedamallu, J Posfai - Source code for biology and medicine, 2010 - Springer
Background Protein-protein interactions are crucially important for cellular processes.
Knowledge of these interactions improves the understanding of cell cycle, metabolism …
Knowledge of these interactions improves the understanding of cell cycle, metabolism …