Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance
Microbial communities are composed of cells of varying metabolic capacity, and regularly
include auxotrophs that lack essential metabolic pathways. Through analysis of auxotrophs …
include auxotrophs that lack essential metabolic pathways. Through analysis of auxotrophs …
Mapping human microbiome drug metabolism by gut bacteria and their genes
M Zimmermann, M Zimmermann-Kogadeeva… - Nature, 2019 - nature.com
Individuals vary widely in their responses to medicinal drugs, which can be dangerous and
expensive owing to treatment delays and adverse effects. Although increasing evidence …
expensive owing to treatment delays and adverse effects. Although increasing evidence …
Bacterial unculturability and the formation of intercellular metabolic networks
The majority of known bacterial species cannot be cultivated under laboratory conditions.
Here we argue that the adaptive emergence of obligate metabolic interactions in natural …
Here we argue that the adaptive emergence of obligate metabolic interactions in natural …
Experimental evolution of metabolic dependency in bacteria
Bacteria frequently lose biosynthetic genes, thus making them dependent on an
environmental uptake of the corresponding metabolite. Despite the ubiquity of this 'genome …
environmental uptake of the corresponding metabolite. Despite the ubiquity of this 'genome …
Personalized mapping of drug metabolism by the human gut microbiome
The human gut microbiome harbors hundreds of bacterial species with diverse biochemical
capabilities. Dozens of drugs have been shown to be metabolized by single isolates from …
capabilities. Dozens of drugs have been shown to be metabolized by single isolates from …
Bioaccumulation of therapeutic drugs by human gut bacteria
Bacteria in the gut can modulate the availability and efficacy of therapeutic drugs. However,
the systematic mapping of the interactions between drugs and bacteria has only started …
the systematic mapping of the interactions between drugs and bacteria has only started …
Metabolic dissimilarity determines the establishment of cross-feeding interactions in bacteria
The exchange of metabolites among different bacterial genotypes profoundly impacts the
structure and function of microbial communities. However, the factors governing the …
structure and function of microbial communities. However, the factors governing the …
Less is more: selective advantages can explain the prevalent loss of biosynthetic genes in bacteria
Bacteria that have adapted to nutrient-rich, stable environments are typically characterized
by reduced genomes. The loss of biosynthetic genes frequently renders these lineages …
by reduced genomes. The loss of biosynthetic genes frequently renders these lineages …
Metabolic heterogeneity and cross-feeding within isogenic yeast populations captured by DILAC
S Kamrad, C Correia-Melo, L Szyrwiel, SK Aulakh… - Nature …, 2023 - nature.com
Genetically identical cells are known to differ in many physiological parameters such as
growth rate and drug tolerance. Metabolic specialization is believed to be a cause of such …
growth rate and drug tolerance. Metabolic specialization is believed to be a cause of such …
The social network of microorganisms—how auxotrophies shape complex communities
K Zengler, LS Zaramela - Nature Reviews Microbiology, 2018 - nature.com
Microorganisms engage in complex interactions with other organisms and their
environment. Recent studies have shown that these interactions are not limited to the …
environment. Recent studies have shown that these interactions are not limited to the …