Frustration in biomolecules

DU Ferreiro, EA Komives, PG Wolynes - Quarterly reviews of …, 2014 - cambridge.org
Biomolecules are the prime information processing elements of living matter. Most of these
inanimate systems are polymers that compute their own structures and dynamics using as …

Surveying biomolecular frustration at atomic resolution

M Chen, X Chen, NP Schafer, C Clementi… - Nature …, 2020 - nature.com
To function, biomolecules require sufficient specificity of interaction as well as stability to live
in the cell while still being able to move. Thermodynamic stability of only a limited number of …

On the role of frustration in the energy landscapes of allosteric proteins

DU Ferreiro, JA Hegler, EA Komives… - Proceedings of the …, 2011 - National Acad Sciences
Natural protein domains must be sufficiently stable to fold but often need to be locally
unstable to function. Overall, strong energetic conflicts are minimized in native states …

Theory of protein folding: the energy landscape perspective

JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …

Localizing frustration in native proteins and protein assemblies

DU Ferreiro, JA Hegler, EA Komives… - Proceedings of the …, 2007 - National Acad Sciences
We propose a method of quantifying the degree of frustration manifested by spatially local
interactions in protein biomolecules. This method of localization smoothly generalizes the …

The physics and bioinformatics of binding and folding—an energy landscape perspective

GA Papoian, PG Wolynes - Biopolymers: Original Research on …, 2003 - Wiley Online Library
It has been recognized in the last few years that unstructured proteins play an important role
in biological organisms, often participating in signal transduction, transcriptional regulation …

Cooperativity principles in protein folding

HS Chan, S Shimizu, H Kaya - Methods in Enzymology, 2004 - Elsevier
Knowledge of the physical driving forces in proteins is essential for understanding their
structures and functions. As polymers, proteins have remarkable thermodynamic and kinetic …

Polymer models of protein stability, folding, and interactions

HX Zhou - Biochemistry, 2004 - ACS Publications
The unfolded state and flexible linkers in the folded structure play essential roles in protein
stability and folding and protein− protein interactions. Intrinsic to these roles is the fact that …

Limited cooperativity in protein folding

V Munoz, LA Campos, M Sadqi - Current Opinion in Structural Biology, 2016 - Elsevier
Theory and simulations predict that the structural concert of protein folding reactions is
relatively low. Experimentally, folding cooperativity has been difficult to study, but in recent …

Chemical physics of protein folding

CL Brooks III, M Gruebele… - Proceedings of the …, 1998 - National Acad Sciences
Protein molecules generally fold into precise threedimensional shapes. While of direct
interest to biochemists, the question of how folding occurs has attracted the interest of a …