Frustration in biomolecules
Biomolecules are the prime information processing elements of living matter. Most of these
inanimate systems are polymers that compute their own structures and dynamics using as …
inanimate systems are polymers that compute their own structures and dynamics using as …
Surveying biomolecular frustration at atomic resolution
To function, biomolecules require sufficient specificity of interaction as well as stability to live
in the cell while still being able to move. Thermodynamic stability of only a limited number of …
in the cell while still being able to move. Thermodynamic stability of only a limited number of …
On the role of frustration in the energy landscapes of allosteric proteins
DU Ferreiro, JA Hegler, EA Komives… - Proceedings of the …, 2011 - National Acad Sciences
Natural protein domains must be sufficiently stable to fold but often need to be locally
unstable to function. Overall, strong energetic conflicts are minimized in native states …
unstable to function. Overall, strong energetic conflicts are minimized in native states …
Theory of protein folding: the energy landscape perspective
JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …
Localizing frustration in native proteins and protein assemblies
DU Ferreiro, JA Hegler, EA Komives… - Proceedings of the …, 2007 - National Acad Sciences
We propose a method of quantifying the degree of frustration manifested by spatially local
interactions in protein biomolecules. This method of localization smoothly generalizes the …
interactions in protein biomolecules. This method of localization smoothly generalizes the …
The physics and bioinformatics of binding and folding—an energy landscape perspective
GA Papoian, PG Wolynes - Biopolymers: Original Research on …, 2003 - Wiley Online Library
It has been recognized in the last few years that unstructured proteins play an important role
in biological organisms, often participating in signal transduction, transcriptional regulation …
in biological organisms, often participating in signal transduction, transcriptional regulation …
Cooperativity principles in protein folding
HS Chan, S Shimizu, H Kaya - Methods in Enzymology, 2004 - Elsevier
Knowledge of the physical driving forces in proteins is essential for understanding their
structures and functions. As polymers, proteins have remarkable thermodynamic and kinetic …
structures and functions. As polymers, proteins have remarkable thermodynamic and kinetic …
Polymer models of protein stability, folding, and interactions
HX Zhou - Biochemistry, 2004 - ACS Publications
The unfolded state and flexible linkers in the folded structure play essential roles in protein
stability and folding and protein− protein interactions. Intrinsic to these roles is the fact that …
stability and folding and protein− protein interactions. Intrinsic to these roles is the fact that …
Limited cooperativity in protein folding
Theory and simulations predict that the structural concert of protein folding reactions is
relatively low. Experimentally, folding cooperativity has been difficult to study, but in recent …
relatively low. Experimentally, folding cooperativity has been difficult to study, but in recent …
Chemical physics of protein folding
CL Brooks III, M Gruebele… - Proceedings of the …, 1998 - National Acad Sciences
Protein molecules generally fold into precise threedimensional shapes. While of direct
interest to biochemists, the question of how folding occurs has attracted the interest of a …
interest to biochemists, the question of how folding occurs has attracted the interest of a …