Comparative transcriptome analysis reveals evolutionary divergence and shared network of cold and salt stress response in diploid D-genome cotton

Y Xu, RO Magwanga, D Jin, X Cai, Y Hou, Z Juyun… - BMC Plant …, 2020 - Springer
Background Wild species of cotton are excellent resistance to abiotic stress. Diploid D-
genome cotton showed abundant phenotypic diversity and was the putative donor species …

Cotton D genome assemblies built with long-read data unveil mechanisms of centromere evolution and stress tolerance divergence

Z Yang, X Ge, W Li, Y Jin, L Liu, W Hu, F Liu, Y Chen… - BMC biology, 2021 - Springer
Background Many of genome features which could help unravel the often complex post-
speciation evolution of closely related species are obscured because of their location in …

Deciphering the complex cotton genome for improving fiber traits and abiotic stress resilience in sustainable agriculture

A Manivannan, T Cheeran Amal - Molecular Biology Reports, 2023 - Springer
Background Understanding the complex cotton genome is of paramount importance in
devising a strategy for sustainable agriculture. Cotton is probably the most economically …

Recent progression and future perspectives in cotton genomic breeding

Z Yang, C Gao, Y Zhang, Q Yan, W Hu… - Journal of Integrative …, 2023 - Wiley Online Library
Upland cotton is an important global cash crop for its long seed fibers and high edible oil
and protein content. Progress in cotton genomics promotes the advancement of cotton …

mRNA-seq Analysis of the Gossypium arboreum transcriptome Reveals Tissue Selective Signaling in Response to Water Stress during Seedling Stage

X Zhang, D Yao, Q Wang, W Xu, Q Wei, C Wang, C Liu… - PloS one, 2013 - journals.plos.org
The cotton diploid species, Gossypium arboreum, shows important properties of stress
tolerance and good genetic stability. In this study, through mRNA-seq, we de novo …

[HTML][HTML] Genomic and epigenomic insights into the mechanism of cold response in upland cotton (Gossypium hirsutum)

J Wang, Z Gong, J Zheng, Z Li, G Zhou, Y Xu… - Plant Physiology and …, 2024 - Elsevier
Functional genome research, including gene transcriptional and posttranslational
modifications of histones, can benefit greatly from a high-quality genome assembly. Histone …

Genomic dissection of genotype× environment interactions conferring adaptation of cotton to arid conditions

Y Saranga, M Menz, CX Jiang, RJ Wright… - Genome …, 2001 - genome.cshlp.org
The interaction of genotype with environment is of primary importance in many aspects of
genomic research and is a special priority in the study of major crops grown in a wide range …

Phenomics‐based GWAS analysis reveals the genetic architecture for drought resistance in cotton

B Li, L Chen, W Sun, D Wu, M Wang… - Plant biotechnology …, 2020 - Wiley Online Library
Drought resistance (DR) is a complex trait that is regulated by a variety of genes. Without
comprehensive profiling of DR‐related traits, the knowledge of the genetic architecture for …

Drought response revealed by chromatin organization variation and transcriptional regulation in cotton

B Zhang, Y Long, L Pei, X Huang, B Li, B Han, M Zhang… - BMC biology, 2024 - Springer
Background Cotton is a major world cash crop and an important source of natural fiber, oil,
and protein. Drought stress is becoming a restrictive factor affecting cotton production. To …

Sequencing multiple cotton genomes reveals complex structures and lays foundation for breeding

Y Pan, F Meng, X Wang - Frontiers in Plant Science, 2020 - frontiersin.org
Cotton is a major fiber plant, which provides raw materials for clothing, protecting humans
from the harsh environment of cold or hot weathers, enriching the culture and custom of …