[HTML][HTML] Industrial biotechnology of Pseudomonas putida: advances and prospects

A Weimer, M Kohlstedt, DC Volke, PI Nikel… - Applied Microbiology …, 2020 - Springer
Pseudomonas putida is a Gram-negative, rod-shaped bacterium that can be encountered in
diverse ecological habitats. This ubiquity is traced to its remarkably versatile metabolism …

[HTML][HTML] Pseudomonas putida as a functional chassis for industrial biocatalysis: from native biochemistry to trans-metabolism

PI Nikel, V de Lorenzo - Metabolic engineering, 2018 - Elsevier
The itinerary followed by Pseudomonas putida from being a soil-dweller and plant colonizer
bacterium to become a flexible and engineer-able platform for metabolic engineering stems …

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

E Belda, RGA Van Heck… - Environmental …, 2016 - Wiley Online Library
By the time the complete genome sequence of the soil bacterium Pseudomonas putida
KT2440 was published in 2002 (Nelson et al.,) this bacterium was considered a potential …

High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities

J Nogales, J Mueller, S Gudmundsson… - Environmental …, 2020 - Wiley Online Library
Genome‐scale reconstructions of metabolism are computational species‐specific
knowledge bases able to compute systemic metabolic properties. We present a …

Genome‐based evolutionary history of Pseudomonas spp

C Hesse, F Schulz, CT Bull, BT Shaffer… - Environmental …, 2018 - Wiley Online Library
Pseudomonas is a large and diverse genus of Gammaproteobacteria. To provide a
framework for discovery of evolutionary and taxonomic relationships of these bacteria, we …

Current perspectives on plant growth-promoting rhizobacteria

JA Parray, S Jan, AN Kamili, RA Qadri… - Journal of Plant growth …, 2016 - Springer
The rhizosphere of plant species is an inimitable ecosystem that harbors an extensive range
of microbes. Research in the wide areas of rhizosphere biotechnology highlighting new …

Modeling microbial communities from atrazine contaminated soils promotes the development of biostimulation solutions

X Xu, R Zarecki, S Medina, S Ofaim, X Liu… - The ISME …, 2019 - academic.oup.com
Microbial communities play a vital role in biogeochemical cycles, allowing the
biodegradation of a wide range of pollutants. The composition of the community and the …

[HTML][HTML] Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups

K Abram, Z Udaondo, C Bleker, V Wanchai… - Communications …, 2021 - nature.com
In this study, more than one hundred thousand Escherichia coli and Shigella genomes were
examined and classified. This is, to our knowledge, the largest E. coli genome dataset …

[HTML][HTML] Model-guided dynamic control of essential metabolic nodes boosts acetyl-coenzyme A–dependent bioproduction in rewired Pseudomonas putida

E Kozaeva, S Volkova, MRA Matos, MP Mezzina… - Metabolic …, 2021 - Elsevier
Pseudomonas putida is evolutionarily endowed with features relevant for bioproduction,
especially under harsh operating conditions. The rich metabolic versatility of this species …

[HTML][HTML] Comparative analysis of the core proteomes among the Pseudomonas major evolutionary groups reveals species-specific adaptations for Pseudomonas …

M Nikolaidis, D Mossialos, SG Oliver, GD Amoutzias - Diversity, 2020 - mdpi.com
The Pseudomonas genus includes many species living in diverse environments and hosts. It
is important to understand which are the major evolutionary groups and what are the …