The Ensembl gene annotation system

BL Aken, S Ayling, D Barrell, L Clarke, V Curwen… - Database, 2016 - academic.oup.com
The Ensembl gene annotation system has been used to annotate over 70 different
vertebrate species across a wide range of genome projects. Furthermore, it generates the …

Predicting the evolution of syntenies—an algorithmic review

N El-Mabrouk - Algorithms, 2021 - mdpi.com
Syntenies are genomic segments of consecutive genes identified by a certain conservation
in gene content and order. The notion of conservation may vary from one definition to …

De novo European eel transcriptome provides insights into the evolutionary history of duplicated genes in teleost lineages

C Rozenfeld, J Blanca, V Gallego, V García-Carpintero… - PloS one, 2019 - journals.plos.org
Paralogues pairs are more frequently observed in eels (Anguilla sp.) than in other teleosts.
The paralogues often show low phylogenetic distances; however, they have been assigned …

Evolution through segmental duplications and losses: a Super-Reconciliation approach

M Delabre, N El-Mabrouk, KT Huber, M Lafond… - Algorithms for Molecular …, 2020 - Springer
The classical gene and species tree reconciliation, used to infer the history of gene gain and
loss explaining the evolution of gene families, assumes an independent evolution for each …

Evolutionary history of the human multigene families reveals widespread gene duplications throughout the history of animals

N Pervaiz, N Shakeel, A Qasim, R Zehra… - BMC Evolutionary …, 2019 - Springer
Background The hypothesis that vertebrates have experienced two ancient, whole genome
duplications (WGDs) is of central interest to evolutionary biology and has been implicated in …

Reconstructing the history of syntenies through super-reconciliation

M Delabre, N El-Mabrouk, KT Huber, M Lafond… - … , RECOMB-CG 2018 …, 2018 - Springer
Classical gene and species tree reconciliation, used to infer the history of gene gain and
loss explaining the evolution of gene families, assumes an independent evolution for each …

An insight into the evolutionary history of human MHC paralogon

R Naz, S Tahir, AA Abbasi - Molecular phylogenetics and evolution, 2017 - Elsevier
The vertebrate genome contains several closely spaced sets of paralogous genes from
distinct gene families on typically two, three or four different chromosomes (paralogons) …

Development of innovative methods for induction of European eel (Anguilla anguilla) spermatogenesis

C Rozenfeld - 2019 - riunet.upv.es
[CA] Com a espècie de renom culinari que pertany a un dels llinatges teleostis més antics,
amb un cicle vital misteriós, un potencial d'aqüicultura excepcional, i una tradició pesquera …

Phylogenetic analyses of human 1/2/8/20 paralogons suggest segmental duplications during animal evolution

F Haq, U Saeed, R Khalid, M Qasim, M Mehmood - 3 Biotech, 2019 - Springer
Susumu Ohno hypothesized that the diversity of vertebrate gene families and genome is due
to two rounds of whole genome duplications (also referred as 2R hypothesis). The …

[PDF][PDF] Evolution of Human Multigene Families

F Batool, N Pervaiz, Q Khalid, AA Abbasi - eLS - researchgate.net
The hypothesis that all the vertebrates, including humans, share two ancestral rounds of
whole-genome duplications (WGDs/2R) is correct or not has recently become quite …