[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
[图书][B] A practical guide to DNA-based methods for biodiversity assessment.
K Bruce, RC Blackman, SJ Bourlat, M Hellström… - 2021 - repository.oceanbestpractices.org
This book represents a synthesis of knowledge and best practice in the field of DNA-based
biomonitoring at the time of writing. It has been written with end-users of molecular tools in …
biomonitoring at the time of writing. It has been written with end-users of molecular tools in …
[HTML][HTML] Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water
Environmental DNA (eDNA) surveys are increasingly being used for biodiversity monitoring,
principally because they are sensitive and can provide high resolution community …
principally because they are sensitive and can provide high resolution community …
[HTML][HTML] Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers
I Cantera, K Cilleros, A Valentini, A Cerdan, T Dejean… - Scientific reports, 2019 - nature.com
Environmental DNA (eDNA) metabarcoding is a promising tool to estimate aquatic
biodiversity. It is based on the capture of DNA from a water sample. The sampled water …
biodiversity. It is based on the capture of DNA from a water sample. The sampled water …
Generating amplicon reads for microbial community assessment with next‐generation sequencing
M Gołębiewski, A Tretyn - Journal of Applied Microbiology, 2020 - academic.oup.com
Marker gene amplicon sequencing is often preferred over whole genome sequencing for
microbial community characterization, due to its lower cost while still enabling assessment of …
microbial community characterization, due to its lower cost while still enabling assessment of …
[HTML][HTML] Chronic trace metals effects of mine tailings on estuarine assemblages revealed by environmental DNA
Mine tailing disasters have occurred worldwide and contemporary release of tailings of large
proportions raise concerns of the chronic impacts that trace metals may have on the aquatic …
proportions raise concerns of the chronic impacts that trace metals may have on the aquatic …
[HTML][HTML] Linking environmental DNA and RNA for improved detection of the marine invasive fanworm Sabella spallanzanii
Environmental DNA is increasingly being used in marine invasive species surveillance
despite the inability to discriminate between contemporary intracellular (ie living) and …
despite the inability to discriminate between contemporary intracellular (ie living) and …
[HTML][HTML] DNA metabarcoding methods for the study of marine benthic meiofauna: A review
Meiofaunal animals, roughly between 0.045 and 1 mm in size, are ubiquitous and
ecologically important inhabitants of benthic marine ecosystems. Their high species …
ecologically important inhabitants of benthic marine ecosystems. Their high species …
[HTML][HTML] Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA
Despite representing one of the largest biomes on earth, biodiversity of the deep seafloor is
still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories …
still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories …