[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …

[图书][B] A practical guide to DNA-based methods for biodiversity assessment.

K Bruce, RC Blackman, SJ Bourlat, M Hellström… - 2021 - repository.oceanbestpractices.org
This book represents a synthesis of knowledge and best practice in the field of DNA-based
biomonitoring at the time of writing. It has been written with end-users of molecular tools in …

[HTML][HTML] Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water

LE Holman, M de Bruyn, S Creer, G Carvalho… - Scientific reports, 2019 - nature.com
Environmental DNA (eDNA) surveys are increasingly being used for biodiversity monitoring,
principally because they are sensitive and can provide high resolution community …

[HTML][HTML] Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers

I Cantera, K Cilleros, A Valentini, A Cerdan, T Dejean… - Scientific reports, 2019 - nature.com
Environmental DNA (eDNA) metabarcoding is a promising tool to estimate aquatic
biodiversity. It is based on the capture of DNA from a water sample. The sampled water …

Generating amplicon reads for microbial community assessment with next‐generation sequencing

M Gołębiewski, A Tretyn - Journal of Applied Microbiology, 2020 - academic.oup.com
Marker gene amplicon sequencing is often preferred over whole genome sequencing for
microbial community characterization, due to its lower cost while still enabling assessment of …

[HTML][HTML] Chronic trace metals effects of mine tailings on estuarine assemblages revealed by environmental DNA

AF Bernardino, FS Pais, LS Oliveira, FA Gabriel… - PeerJ, 2019 - peerj.com
Mine tailing disasters have occurred worldwide and contemporary release of tailings of large
proportions raise concerns of the chronic impacts that trace metals may have on the aquatic …

[HTML][HTML] Linking environmental DNA and RNA for improved detection of the marine invasive fanworm Sabella spallanzanii

U Von Ammon, SA Wood, O Laroche… - Frontiers in Marine …, 2019 - frontiersin.org
Environmental DNA is increasingly being used in marine invasive species surveillance
despite the inability to discriminate between contemporary intracellular (ie living) and …

[HTML][HTML] DNA metabarcoding methods for the study of marine benthic meiofauna: A review

R Gielings, M Fais, D Fontaneto, S Creer… - Frontiers in Marine …, 2021 - frontiersin.org
Meiofaunal animals, roughly between 0.045 and 1 mm in size, are ubiquitous and
ecologically important inhabitants of benthic marine ecosystems. Their high species …

[HTML][HTML] Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

MI Brandt, F Pradillon, B Trouche, N Henry… - Scientific Reports, 2021 - nature.com
Despite representing one of the largest biomes on earth, biodiversity of the deep seafloor is
still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories …