[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment
F Keck, RC Blackman, R Bossart… - Molecular …, 2022 - Wiley Online Library
DNA metabarcoding is increasingly used for the assessment of aquatic communities, and
numerous studies have investigated the consistency of this technique with traditional …
numerous studies have investigated the consistency of this technique with traditional …
Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
Effective marine management requires comprehensive data on the status of marine
biodiversity. However, efficient methods that can document biodiversity in our oceans are …
biodiversity. However, efficient methods that can document biodiversity in our oceans are …
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
Assessing strengths and weaknesses of DNA metabarcoding‐based macroinvertebrate identification for routine stream monitoring
V Elbrecht, EE Vamos, K Meissner… - Methods in Ecology …, 2017 - Wiley Online Library
DNA metabarcoding holds great promise for the assessment of macroinvertebrates in
stream ecosystems. However, few large‐scale studies have compared the performance of …
stream ecosystems. However, few large‐scale studies have compared the performance of …
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
Remote deep-ocean sediment (DOS) ecosystems are among the least explored biomes on
Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic …
Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic …
DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers
OS Wangensteen, C Palacín, M Guardiola, X Turon - PeerJ, 2018 - peerj.com
Biodiversity assessment of marine hard-bottom communities is hindered by the high
diversity and size-ranges of the organisms present. We developed a DNA metabarcoding …
diversity and size-ranges of the organisms present. We developed a DNA metabarcoding …
Population‐level inferences from environmental DNA—Current status and future perspectives
EE Sigsgaard, MR Jensen… - Evolutionary …, 2020 - Wiley Online Library
Environmental DNA (eDNA) extracted from water samples has recently shown potential as a
valuable source of population genetic information for aquatic macroorganisms. This …
valuable source of population genetic information for aquatic macroorganisms. This …
Benchmarking DNA metabarcoding for biodiversity-based monitoring and assessment
Characterization of biodiversity has been extensively used to confidently monitor and assess
environmental status. Yet, visual morphology, traditionally and widely used for species …
environmental status. Yet, visual morphology, traditionally and widely used for species …