Predicting the evolution of syntenies—an algorithmic review
N El-Mabrouk - Algorithms, 2021 - mdpi.com
Syntenies are genomic segments of consecutive genes identified by a certain conservation
in gene content and order. The notion of conservation may vary from one definition to …
in gene content and order. The notion of conservation may vary from one definition to …
Evolution through segmental duplications and losses: a Super-Reconciliation approach
The classical gene and species tree reconciliation, used to infer the history of gene gain and
loss explaining the evolution of gene families, assumes an independent evolution for each …
loss explaining the evolution of gene families, assumes an independent evolution for each …
Evolutionary history of the human multigene families reveals widespread gene duplications throughout the history of animals
N Pervaiz, N Shakeel, A Qasim, R Zehra… - BMC Evolutionary …, 2019 - Springer
Background The hypothesis that vertebrates have experienced two ancient, whole genome
duplications (WGDs) is of central interest to evolutionary biology and has been implicated in …
duplications (WGDs) is of central interest to evolutionary biology and has been implicated in …
Phylogenomic analysis reveals ancient segmental duplications in the human genome
M Hafeez, M Shabbir, F Altaf, AA Abbasi - Molecular Phylogenetics and …, 2016 - Elsevier
Evolution of organismal complexity and origin of novelties during vertebrate history has
been widely explored in context of both regulation of gene expression and gene duplication …
been widely explored in context of both regulation of gene expression and gene duplication …
Reconstructing the history of syntenies through super-reconciliation
Classical gene and species tree reconciliation, used to infer the history of gene gain and
loss explaining the evolution of gene families, assumes an independent evolution for each …
loss explaining the evolution of gene families, assumes an independent evolution for each …
An insight into the evolutionary history of human MHC paralogon
R Naz, S Tahir, AA Abbasi - Molecular phylogenetics and evolution, 2017 - Elsevier
The vertebrate genome contains several closely spaced sets of paralogous genes from
distinct gene families on typically two, three or four different chromosomes (paralogons) …
distinct gene families on typically two, three or four different chromosomes (paralogons) …
Phylogenetic Analysis: GeneDuplicationandSpeciation
Significant progresshasbeenmadeinthepastfewdecade… theoryoftheoriginofspecies.
Different genomic methodshavehelpedtounderstandthegeneti… flow thatmakesnewspecies …
Different genomic methodshavehelpedtounderstandthegeneti… flow thatmakesnewspecies …
Functional conservation and divergence of duplicated fibroblast growth factor receptor 1 (fgfr1) genes in blunt snout bream (Megalobrama amblycephala)
QQ Zhang, FG Li, B Qin, J Chen, XY Jiang, SM Zou - Gene, 2015 - Elsevier
Fgfr1 is a fibroblast growth factor receptor involved in regulating cell growth, proliferation,
differentiation and migration. Here, we report the isolation and characterization of duplicated …
differentiation and migration. Here, we report the isolation and characterization of duplicated …
Computational Analysis of Rerep-Seq and Extrachromosomal Circular DNA
P Tatman - 2022 - search.proquest.com
Genomic amplifications are important in human evolution, physiology, and pathophysiology.
Rereplication is one mechanism that can produce site-specific amplifications. However …
Rereplication is one mechanism that can produce site-specific amplifications. However …
Phylogenetic analyses of human 1/2/8/20 paralogons suggest segmental duplications during animal evolution
Susumu Ohno hypothesized that the diversity of vertebrate gene families and genome is due
to two rounds of whole genome duplications (also referred as 2R hypothesis). The …
to two rounds of whole genome duplications (also referred as 2R hypothesis). The …