Biosynthesis of the Azoxy Compound Azodyrecin from Streptomyces mirabilis P8-A2

M Maleckis, M Wibowo, T Gren, SA Jarmusch… - ACS chemical …, 2024 - ACS Publications
Azoxy compounds are a distinctive group of bioactive secondary metabolites characterized
by a unique RN═ N+ (O–) R moiety. The azoxy moiety is present in various classes of …

Genome evolution of Buchnera aphidicola (Gammaproteobacteria): Insights into strand compositional asymmetry, codon usage bias, and phylogenetic implications

H Ding, J Gao, J Yang, S Zhang, S Han, R Yi… - International Journal of …, 2023 - Elsevier
Taxa of Buchnera aphidicola (hereafter “Buchnera”) are mutualistic intracellular symbionts of
aphids, known for their remarkable biological traits such as genome reduction, strand …

Recent advances in the characterization of essential genes and development of a database of essential genes

YT Liang, H Luo, Y Lin, F Gao - Imeta, 2024 - Wiley Online Library
Over the past few decades, there has been a significant interest in the study of essential
genes, which are crucial for the survival of an organism under specific environmental …

The replication enhancer crtS depends on transcription factor Lrp for modulating binding of initiator RctB to ori2 of Vibrio cholerae

A Doan, S Chatterjee, R Kothapalli, Z Khan… - Nucleic acids …, 2024 - academic.oup.com
Replication of Vibrio cholerae chromosome 2 (Chr2) initiates when the Chr1 locus, crtS (C
hr2 r eplication t riggering s ite) duplicates. The site binds the Chr2 initiator, RctB, and the …

Unveiling human origins of replication using deep learning: accurate prediction and comprehensive analysis

ZN Yin, FL Lai, F Gao - Briefings in Bioinformatics, 2024 - academic.oup.com
Accurate identification of replication origins (ORIs) is crucial for a comprehensive
investigation into the progression of human cell growth and cancer therapy. Here, we …

Isolation, biochemical characterization, and genome sequencing of two high‐quality genomes of a novel chitinolytic Jeongeupia species

ND Arnold, D Garbe, TB Brück - MicrobiologyOpen, 2023 - Wiley Online Library
Chitin is the second most abundant polysaccharide worldwide as part of arthropods'
exoskeletons and fungal cell walls. Low concentrations in soils and sediments indicate rapid …

Databases and Tools for Microbial Genome and Human Microbiome Studies

S Hojaisa, AN Jha - … and Biotechnology: Emerging concepts in Microbial …, 2023 - Springer
The term microbe refers to the diverse spectrum of microscopic archaea, bacteria, protist,
fungi, and algae, of which some are beneficial, whereas others might be harmful. Being …

ORCA: Predicting replication origins in circular prokaryotic chromosomes

Z van Meel, JA Baaijens - bioRxiv, 2024 - biorxiv.org
The proximity of genes to the origin of replication plays a key role in replication and
transcription-related processes in bacteria. Computational prediction of potential origin …

Unlocking a Potent Chitin Saccharification System in a Novel Bacterium Through Omics and Bioinformatics

ND Arnold - 2024 - mediatum.ub.tum.de
This thesis was part of the ChitoMat project, aiming to explore novel enzymes for chitin
conversion into tailored chitooligosaccharides. It led to the discovery of a novel chitinolytic …

[PDF][PDF] Analyses for mechanisms in formation of the replication initiation complex and for functional characteristics of the DNA unwinding region at the replication origin …

盧楚元 - 2023 - catalog.lib.kyushu-u.ac.jp
Initiation of chromosomal replication requires dynamic nucleoprotein complexes. In most
eubacteria, the origin oriC contains multiple DnaA box sequences to which the ubiquitous …