[PDF][PDF] MembraneAnalysis. jl: A Julia package for analyzing molecular dynamics simulations of lipid membranes
Biological membranes separate living cells from their surroundings, and, in case of
eukaryotes, partition the cell into its constituent organelles. These bilayer structures, which …
eukaryotes, partition the cell into its constituent organelles. These bilayer structures, which …
[HTML][HTML] MOSAICS: A software suite for analysis of membrane structure and dynamics in simulated trajectories
N Bernhardt, JD Faraldo-Gómez - Biophysical Journal, 2023 - cell.com
Molecular dynamics (MD) simulations have become the predominant computational
analysis method in membrane biophysics, as this technique is uniquely suited for …
analysis method in membrane biophysics, as this technique is uniquely suited for …
FATSLiM: a fast and robust software to analyze MD simulations of membranes
S Buchoux - Bioinformatics, 2017 - academic.oup.com
When studying biological membranes, Molecular Dynamics (MD) simulations reveal to be
quite complementary to experimental techniques. Because the simulated systems keep …
quite complementary to experimental techniques. Because the simulated systems keep …
[HTML][HTML] Unraveling membrane properties at the organelle-level with LipidDyn
Cellular membranes are formed from different lipids in various amounts and proportions
depending on the subcellular localization. The lipid composition of membranes is sensitive …
depending on the subcellular localization. The lipid composition of membranes is sensitive …
[HTML][HTML] Efficient preparation and analysis of membrane and membrane protein systems
M Javanainen, H Martinez-Seara - Biochimica et Biophysica Acta (BBA) …, 2016 - Elsevier
Molecular dynamics (MD) simulations have become a highly important technique to
consider lipid membrane systems, and quite often they provide considerable added value to …
consider lipid membrane systems, and quite often they provide considerable added value to …
MEMBPLUGIN: studying membrane complexity in VMD
R Guixà-González, I Rodriguez-Espigares… - …, 2014 - academic.oup.com
Computer simulations are giving way to more complex and accurate studies of biological
membranes by molecular dynamics (MD) simulations. The analysis of MD trajectories …
membranes by molecular dynamics (MD) simulations. The analysis of MD trajectories …
[PDF][PDF] Lipid membranes: Theory and simulations bridged to experiments
I Vattulainen, T Róg - Biochim. Biophys. Acta, 2016 - helda.helsinki.fi
There are essentially five classes of molecules that are the corner stones of life. DNA in
terms of nucleic acids contains the information of building proteins that are the nanoscale …
terms of nucleic acids contains the information of building proteins that are the nanoscale …
Computational modeling of realistic cell membranes
Cell membranes contain a large variety of lipid types and are crowded with proteins,
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …
APL@ voro—interactive visualization and analysis of cell membrane simulations
Molecular dynamics (MD) simulations of cell membranes allow for a better understanding of
complex processes such as changing membrane dynamics, lipid rafts and the …
complex processes such as changing membrane dynamics, lipid rafts and the …
Bioinformatics for Membrane Lipid Simulations: Models, Computational Methods, and Web Server Tools
Biological membranes are complex environments consisting of different types of lipids and
membrane proteins. The structure of a lipid bilayer is typically difficult to study because the …
membrane proteins. The structure of a lipid bilayer is typically difficult to study because the …