Maximal unbiased benchmarking data sets for human chemokine receptors and comparative analysis

J Xia, TE Reid, S Wu, L Zhang… - Journal of chemical …, 2018 - ACS Publications
Chemokine receptors (CRs) have long been druggable targets for the treatment of
inflammatory diseases and HIV-1 infection. As a powerful technique, virtual screening (VS) …

SimG: an alignment based method for evaluating the similarity of small molecules and binding sites

C Cai, J Gong, X Liu, D Gao, H Li - Journal of chemical information …, 2013 - ACS Publications
In this study, a Gaussian volume overlap and chemical feature based molecular similarity
metric was devised, and a downhill simplex searching was carried out to evaluate the …

Graph-based similarity concepts in virtual screening

MC Hutter - Future medicinal chemistry, 2011 - Taylor & Francis
Applying similarity for finding new promising compounds is a key issue in drug design.
Conversely, quantifying similarity between molecules has remained a difficult task despite …

LINGO-DL: a text-based approach for molecular similarity searching

A Abdo, M Pupin - Journal of Computer-Aided Molecular Design, 2021 - Springer
The line notations of chemical structures are more compact than those of graphs and
connection tables, so they can be useful for storing and transferring a large number of …

Probabilistic modeling of conformational space for 3D machine learning approaches

A Jahn, G Hinselmann, N Fechner… - Molecular …, 2010 - Wiley Online Library
We present a new probabilistic encoding of the conformational space of a molecule that
allows for the integration into common similarity calculations. The method uses distance …

Inhibitors of HIV‐1 Integrase‐Human LEDGF/p75 Interaction Identified from Natural Products via Virtual Screening

G Hu, X Li, Y Li, X Sun, G Liu, W Li… - Chinese Journal of …, 2012 - Wiley Online Library
Abstract HIV‐1 integrase (IN)‐mediated integration of viral DNA into the host chromosome is
an essential step in the virus life cycle. Human lens epithelium‐derived growth factor …

Computational methods for the discovery of mood disorder therapies

F López-Vallejo, TL Peppard… - Expert Opinion on …, 2011 - Taylor & Francis
Introduction: Despite the significant progress, research is still needed to reveal details of the
complex and dynamic chemical processes operating in the central nervous system (CNS) …

3D-Pharma, A Ligand-based Virtual Screening tool using 3D Pharmacophore Fingerprints

BF Domingues, A Martins-José, JCD Lopes - 2024 - chemrxiv.org
In this work, we introduced 3D-Pharma, a new Ligand-Based Virtual Screening method that
uses fingerprints of pharmacophore triplets at atomic resolutions to build very simple and …

3D-Pharma: Uma ferramenta para triagem virtual baseada em fingerprints de farmacóforos

BF Domingues - 2012 - repositorio.ufmg.br
A indústria farmacêutica vive uma crise sem precedentes, cuja causa pode ser atribuıdaa
queda vertiginosa de descobertas e registros de novas entidades moleculares, agravada …

[引用][C] System Theoretic Methods in Drug Discovery and Vaccine Formulation, Review and Perspectives

A Sharma, YC Hsiao, A Dutta - Review and Perspectives (March 24, 2023), 2023