Maximal unbiased benchmarking data sets for human chemokine receptors and comparative analysis
J Xia, TE Reid, S Wu, L Zhang… - Journal of chemical …, 2018 - ACS Publications
Chemokine receptors (CRs) have long been druggable targets for the treatment of
inflammatory diseases and HIV-1 infection. As a powerful technique, virtual screening (VS) …
inflammatory diseases and HIV-1 infection. As a powerful technique, virtual screening (VS) …
SimG: an alignment based method for evaluating the similarity of small molecules and binding sites
C Cai, J Gong, X Liu, D Gao, H Li - Journal of chemical information …, 2013 - ACS Publications
In this study, a Gaussian volume overlap and chemical feature based molecular similarity
metric was devised, and a downhill simplex searching was carried out to evaluate the …
metric was devised, and a downhill simplex searching was carried out to evaluate the …
Graph-based similarity concepts in virtual screening
MC Hutter - Future medicinal chemistry, 2011 - Taylor & Francis
Applying similarity for finding new promising compounds is a key issue in drug design.
Conversely, quantifying similarity between molecules has remained a difficult task despite …
Conversely, quantifying similarity between molecules has remained a difficult task despite …
LINGO-DL: a text-based approach for molecular similarity searching
A Abdo, M Pupin - Journal of Computer-Aided Molecular Design, 2021 - Springer
The line notations of chemical structures are more compact than those of graphs and
connection tables, so they can be useful for storing and transferring a large number of …
connection tables, so they can be useful for storing and transferring a large number of …
Probabilistic modeling of conformational space for 3D machine learning approaches
A Jahn, G Hinselmann, N Fechner… - Molecular …, 2010 - Wiley Online Library
We present a new probabilistic encoding of the conformational space of a molecule that
allows for the integration into common similarity calculations. The method uses distance …
allows for the integration into common similarity calculations. The method uses distance …
Inhibitors of HIV‐1 Integrase‐Human LEDGF/p75 Interaction Identified from Natural Products via Virtual Screening
Abstract HIV‐1 integrase (IN)‐mediated integration of viral DNA into the host chromosome is
an essential step in the virus life cycle. Human lens epithelium‐derived growth factor …
an essential step in the virus life cycle. Human lens epithelium‐derived growth factor …
Computational methods for the discovery of mood disorder therapies
F López-Vallejo, TL Peppard… - Expert Opinion on …, 2011 - Taylor & Francis
Introduction: Despite the significant progress, research is still needed to reveal details of the
complex and dynamic chemical processes operating in the central nervous system (CNS) …
complex and dynamic chemical processes operating in the central nervous system (CNS) …
3D-Pharma, A Ligand-based Virtual Screening tool using 3D Pharmacophore Fingerprints
BF Domingues, A Martins-José, JCD Lopes - 2024 - chemrxiv.org
In this work, we introduced 3D-Pharma, a new Ligand-Based Virtual Screening method that
uses fingerprints of pharmacophore triplets at atomic resolutions to build very simple and …
uses fingerprints of pharmacophore triplets at atomic resolutions to build very simple and …
3D-Pharma: Uma ferramenta para triagem virtual baseada em fingerprints de farmacóforos
BF Domingues - 2012 - repositorio.ufmg.br
A indústria farmacêutica vive uma crise sem precedentes, cuja causa pode ser atribuıdaa
queda vertiginosa de descobertas e registros de novas entidades moleculares, agravada …
queda vertiginosa de descobertas e registros de novas entidades moleculares, agravada …