Fragment-based discovery of a chemical probe for the PWWP1 domain of NSD3

J Böttcher, D Dilworth, U Reiser, RA Neumüller… - Nature chemical …, 2019 - nature.com
Here, we report the fragment-based discovery of BI-9321, a potent, selective and cellular
active antagonist of the NSD3-PWWP1 domain. The human NSD3 protein is encoded by the …

Virtual screening and its integration with modern drug design technologies

AD Andricopulo, RVC Guido… - Current medicinal …, 2008 - ingentaconnect.com
Drug discovery is a highly complex and costly process, which demands integrated efforts in
several relevant aspects involving innovation, knowledge, information, technologies …

Combination of similarity rankings using data fusion

P Willett - Journal of chemical information and modeling, 2013 - ACS Publications
Similarity searching is one of the most common techniques for ligand-based virtual
screening and involves scanning a chemical database to identify those molecules that are …

ToDD: Topological compound fingerprinting in computer-aided drug discovery

A Demir, B Coskunuzer, Y Gel… - Advances in …, 2022 - proceedings.neurips.cc
In computer-aided drug discovery (CADD), virtual screening (VS) is used for comparing a
library of compounds against known active ligands to identify the drug candidates that are …

Cheminformatics analysis and learning in a data pipelining environment

M Hassan, RD Brown, S Varma-O'Brien, D Rogers - Molecular diversity, 2006 - Springer
Workflow technology is being increasingly applied in discovery information to organize and
analyze data. SciTegic's Pipeline Pilot is a chemically intelligent implementation of a …

Similarity searching using 2D structural fingerprints

P Willett - Chemoinformatics and computational chemical biology, 2011 - Springer
This chapter reviews the use of molecular fingerprints for chemical similarity searching. The
fingerprints encode the presence of 2D substructural fragments in a molecule, and the …

The impact of in silico screening in the discovery of novel and safer drug candidates

D Rognan - Pharmacology & therapeutics, 2017 - Elsevier
Drug discovery is a multidisciplinary and multivariate optimization endeavor. As such, in
silico screening tools have gained considerable importance to archive, analyze and exploit …

Quantifying the relationships among drug classes

J Hert, MJ Keiser, JJ Irwin, TI Oprea… - Journal of chemical …, 2008 - ACS Publications
The similarity of drug targets is typically measured using sequence or structural information.
Here, we consider chemo-centric approaches that measure target similarity on the basis of …

Probabilistic approaches in activity prediction

D Filimonov, V Poroikov - 2008 - books.rsc.org
Biological activity has a probabilistic nature, and the most appropriate approaches in activity
prediction are based on the theory of probability. The statistical nature of the maximum …

On scaffolds and hopping in medicinal chemistry

N Brown, E Jacoby - Mini reviews in medicinal chemistry, 2006 - ingentaconnect.com
The molecular scaffold is an oft-cited concept in medicinal chemistry suggesting that the
definition of what makes a scaffold is rigorous and objective. However, this is far from the …