PubChem substance and compound databases

S Kim, PA Thiessen, EE Bolton, J Chen… - Nucleic acids …, 2016 - academic.oup.com
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a public repository for information
on chemical substances and their biological activities, launched in 2004 as a component of …

Exploring chemical information in PubChem

S Kim - Current protocols, 2021 - Wiley Online Library
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a public chemical database that
serves scientific communities as well as the general public. This database collects chemical …

New advances in clinical application of neostigmine: no longer focusing solely on increasing skeletal muscle strength

S Si, X Zhao, F Su, H Lu, D Zhang, L Sun… - Frontiers in …, 2023 - frontiersin.org
Neostigmine is a clinical cholinesterase inhibitor, that is, commonly used to enhance the
function of the cholinergic neuromuscular junction. Recent studies have shown that …

PubChem chemical structure standardization

VD Hähnke, S Kim, EE Bolton - Journal of cheminformatics, 2018 - Springer
Background PubChem is a chemical information repository, consisting of three primary
databases: Substance, Compound, and BioAssay. When individual data contributors submit …

An update on PUG-REST: RESTful interface for programmatic access to PubChem

S Kim, PA Thiessen, T Cheng, B Yu… - Nucleic Acids …, 2018 - academic.oup.com
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is one of the largest open chemical
information resources available. It currently receives millions of unique users per month on …

Fast, efficient fragment-based coordinate generation for Open Babel

N Yoshikawa, GR Hutchison - Journal of cheminformatics, 2019 - Springer
Rapidly predicting an accurate three dimensional geometry of a molecule is a crucial task for
cheminformatics and across a wide range of molecular modeling. Consequently, developing …

The interplay between molecular modeling and chemoinformatics to characterize protein–ligand and protein–protein interactions landscapes for drug discovery

JL Medina-Franco, O Méndez-Lucio… - Advances in protein …, 2014 - Elsevier
Protein–ligand and protein–protein interactions play a fundamental role in drug discovery. A
number of computational approaches have been developed to characterize and use the …

Efficient conformational ensemble generation of protein-bound peptides

Y Yan, DI Zhang, SY Huang - Journal of cheminformatics, 2017 - Springer
Conformation generation of protein-bound peptides is critical for the determination of protein–
peptide complex structures. Despite significant progress in conformer generation of small …

Atom pair 2D-fingerprints perceive 3D-molecular shape and pharmacophores for very fast virtual screening of ZINC and GDB-17

M Awale, JL Reymond - Journal of chemical information and …, 2014 - ACS Publications
Three-dimensional (3D) molecular shape and pharmacophores are important determinants
of the biological activity of organic molecules; however, a precise computation of 3D-shape …

QUAM-AFM: a free database for molecular identification by atomic force microscopy

J Carracedo-Cosme, C Romero-Muñiz… - Journal of Chemical …, 2022 - ACS Publications
This paper introduces Quasar Science Resources–Autonomous University of Madrid atomic
force microscopy image data set (QUAM-AFM), the largest data set of simulated atomic force …