[PDF][PDF] Predicting ADME properties and side effects: the BioPrint approach

CM Krejsa, D Horvath, SL Rogalski… - Current opinion in …, 2003 - academia.edu
Computational methods are increasingly used to streamline and enhance the lead discovery
and optimization process. However, accurate prediction of absorption, distribution …

Chemical space navigation in lead discovery

TI Oprea - Current opinion in chemical biology, 2002 - Elsevier
The number of new chemical entities has remained rather constant (averaging 37 per year)
in the past decade, despite the multiple-fold increase in the number of compounds that are …

[PDF][PDF] ISIDA-Platform for virtual screening based on fragment and pharmacophoric descriptors

A Varnek, D Fourches, D Horvath… - … Computer-Aided Drug …, 2008 - academia.edu
In this paper we illustrate the application of the ISIDA (In SIlico design and Data Analysis)
software to perform virtual screening of large databases of compounds and reactions and to …

Neighborhood behavior of in silico structural spaces with respect to in vitro activity spaces− a novel understanding of the molecular similarity principle in the context of …

D Horvath, C Jeandenans - Journal of chemical information and …, 2003 - ACS Publications
As a consequence of recent advances in the field of High Throughput Screening, the
systematic testing (“in vitro profiling”) of compounds against a panel of targets covering …

Trends in virtual combinatorial library design

G Schneider - Current medicinal chemistry, 2002 - ingentaconnect.com
Recent developments in combinatorial molecular design using virtual screening methods
are summarised. These include similarity-based compound clustering techniques, structure …

Fuzzy tricentric pharmacophore fingerprints. 1. Topological fuzzy pharmacophore triplets and adapted molecular similarity scoring schemes

F Bonachéra, B Parent, F Barbosa… - Journal of chemical …, 2006 - ACS Publications
This paper introduces a novel molecular description topological (2D) fuzzy pharmacophore
triplets, 2D-FPT using the number of interposed bonds as the measure of separation …

From hit to lead. Combining two complementary methods for focused library design. Application to μ opiate ligands

R Poulain, D Horvath, B Bonnet, C Eckhoff… - Journal of medicinal …, 2001 - ACS Publications
Compound 1 obtained by random screening and displaying a micromolar activity on the μ
opiate receptor was chosen as a starting point for optimization. Two complementary …

Similarity metrics and descriptor spaces–which combinations to choose?

RC Glen, SE Adams - QSAR & Combinatorial Science, 2006 - Wiley Online Library
Molecular similarity is widely used in virtual screening. There are a very large number of
possible combinations of molecular descriptors and analysis methods that can be combined …

From hit to lead. Analyzing structure− profile relationships

R Poulain, D Horvath, B Bonnet, C Eckhoff… - Journal of medicinal …, 2001 - ACS Publications
Two compounds, obtained by random screening, and displaying micromolar activities on the
μ opiate receptor were used as starting points for optimization. In that work, the traditional …

Molecular similarity and property similarity

F Barbosa, D Horvath - Current topics in medicinal chemistry, 2004 - ingentaconnect.com
This paper reviews the main efforts undertaken up to date in order to understand, rationalize
and apply the similarity principle (similar compounds=> similar properties) as a …