[HTML][HTML] Merging ligand-based and structure-based methods in drug discovery: An overview of combined virtual screening approaches

J Vázquez, M López, E Gibert, E Herrero, FJ Luque - Molecules, 2020 - mdpi.com
Virtual screening (VS) is an outstanding cornerstone in the drug discovery pipeline. A variety
of computational approaches, which are generally classified as ligand-based (LB) and …

Virtual screening strategies in drug discovery: a critical review

A Lavecchia, C Di Giovanni - Current medicinal chemistry, 2013 - ingentaconnect.com
Virtual screening (VS) is a powerful technique for identifying hit molecules as starting points
for medicinal chemistry. The number of methods and softwares which use the ligand and …

Combination of ligand-and structure-based methods in virtual screening

MN Drwal, R Griffith - Drug Discovery Today: Technologies, 2013 - Elsevier
The combination of ligand-and structure-based molecular modelling methods has become a
common approach in virtual screening. This review describes different strategies for …

Harnessing systematic protein–ligand interaction fingerprints for drug discovery

Z Zhao, PE Bourne - Drug Discovery Today, 2022 - Elsevier
Highlights•Review of function-site interaction fingerprints for drug discovery.•Study of the
polypharmacology of kinase inhibitors.•Kinase allosteric and covalent inhibitors.Determining …

Integrating virtual screening and combinatorial chemistry for accelerated drug discovery

F López-Vallejo, T Caulfield… - … Chemistry & High …, 2011 - ingentaconnect.com
Virtual screening is increasingly being used in drug discovery programs with a growing
number of successful applications. Experimental methodologies developed to speed up the …

Hierarchical virtual screening approaches in small molecule drug discovery

A Kumar, KYJ Zhang - Methods, 2015 - Elsevier
Virtual screening has played a significant role in the discovery of small molecule inhibitors of
therapeutic targets in last two decades. Various ligand and structure-based virtual screening …

Integrating structure-based and ligand-based approaches for computational drug design

GL Wilson, MA Lill - Future medicinal chemistry, 2011 - Taylor & Francis
Methods utilized in computer-aided drug design can be classified into two major categories:
structure based and ligand based, using information on the structure of the protein or on the …

Combination of similarity rankings using data fusion

P Willett - Journal of chemical information and modeling, 2013 - ACS Publications
Similarity searching is one of the most common techniques for ligand-based virtual
screening and involves scanning a chemical database to identify those molecules that are …

Integrated approach to structure-based enzymatic drug design: molecular modeling, spectroscopy, and experimental bioactivity

B Honarparvar, T Govender, GEM Maguire… - Chemical …, 2014 - ACS Publications
Analysis of the literature involving computational modeling of diseases and drug design with
the aid of experimental spectroscopic techniques reveals that this specific combination of …

Active learning for computational chemogenomics

D Reker, P Schneider, G Schneider… - Future medicinal …, 2017 - Taylor & Francis
Aim: Computational chemogenomics models the compound–protein interaction space,
typically for drug discovery, where existing methods predominantly either incorporate …