Geometric deep learning on molecular representations
Geometric deep learning (GDL) is based on neural network architectures that incorporate
and process symmetry information. GDL bears promise for molecular modelling applications …
and process symmetry information. GDL bears promise for molecular modelling applications …
Physics-inspired structural representations for molecules and materials
The first step in the construction of a regression model or a data-driven analysis, aiming to
predict or elucidate the relationship between the atomic-scale structure of matter and its …
predict or elucidate the relationship between the atomic-scale structure of matter and its …
Pre-training molecular graph representation with 3d geometry
Molecular graph representation learning is a fundamental problem in modern drug and
material discovery. Molecular graphs are typically modeled by their 2D topological …
material discovery. Molecular graphs are typically modeled by their 2D topological …
3d infomax improves gnns for molecular property prediction
Molecular property prediction is one of the fastest-growing applications of deep learning with
critical real-world impacts. Although the 3D molecular graph structure is necessary for …
critical real-world impacts. Although the 3D molecular graph structure is necessary for …
ComENet: Towards complete and efficient message passing for 3D molecular graphs
Many real-world data can be modeled as 3D graphs, but learning representations that
incorporates 3D information completely and efficiently is challenging. Existing methods …
incorporates 3D information completely and efficiently is challenging. Existing methods …
Artificial intelligence for science in quantum, atomistic, and continuum systems
Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …
Geomol: Torsional geometric generation of molecular 3d conformer ensembles
Prediction of a molecule's 3D conformer ensemble from the molecular graph holds a key
role in areas of cheminformatics and drug discovery. Existing generative models have …
role in areas of cheminformatics and drug discovery. Existing generative models have …
[HTML][HTML] GEOM, energy-annotated molecular conformations for property prediction and molecular generation
S Axelrod, R Gomez-Bombarelli - Scientific Data, 2022 - nature.com
Abstract Machine learning (ML) outperforms traditional approaches in many molecular
design tasks. ML models usually predict molecular properties from a 2D chemical graph or a …
design tasks. ML models usually predict molecular properties from a 2D chemical graph or a …
[HTML][HTML] Neural scaling of deep chemical models
Massive scale, in terms of both data availability and computation, enables important
breakthroughs in key application areas of deep learning such as natural language …
breakthroughs in key application areas of deep learning such as natural language …
Learning matter: Materials design with machine learning and atomistic simulations
S Axelrod, D Schwalbe-Koda… - Accounts of Materials …, 2022 - ACS Publications
Conspectus Designing new materials is vital for addressing pressing societal challenges in
health, energy, and sustainability. The combination of physicochemical laws and empirical …
health, energy, and sustainability. The combination of physicochemical laws and empirical …