Machine learning and artificial intelligence in toxicological sciences

Z Lin, WC Chou - Toxicological Sciences, 2022 - academic.oup.com
Abstract Machine learning and artificial intelligence approaches have revolutionized
multiple disciplines, including toxicology. This review summarizes representative recent …

Advancing computational toxicology in the big data era by artificial intelligence: data-driven and mechanism-driven modeling for chemical toxicity

HL Ciallella, H Zhu - Chemical research in toxicology, 2019 - ACS Publications
In 2016, the Frank R. Lautenberg Chemical Safety for the 21st Century Act became the first
US legislation to advance chemical safety evaluations by utilizing novel testing approaches …

Interpretation of compound activity predictions from complex machine learning models using local approximations and shapley values

R Rodríguez-Pérez, J Bajorath - Journal of medicinal chemistry, 2019 - ACS Publications
In qualitative or quantitative studies of structure–activity relationships (SARs), machine
learning (ML) models are trained to recognize structural patterns that differentiate between …

QSAR modeling: where have you been? Where are you going to?

A Cherkasov, EN Muratov, D Fourches… - Journal of medicinal …, 2014 - ACS Publications
Quantitative structure–activity relationship modeling is one of the major computational tools
employed in medicinal chemistry. However, throughout its entire history it has drawn both …

Deep-learning: investigating deep neural networks hyper-parameters and comparison of performance to shallow methods for modeling bioactivity data

A Koutsoukas, KJ Monaghan, X Li, J Huan - Journal of cheminformatics, 2017 - Springer
Background In recent years, research in artificial neural networks has resurged, now under
the deep-learning umbrella, and grown extremely popular. Recently reported success of DL …

Interpretation of quantitative structure–activity relationship models: past, present, and future

P Polishchuk - Journal of Chemical Information and Modeling, 2017 - ACS Publications
This paper is an overview of the most significant and impactful interpretation approaches of
quantitative structure–activity relationship (QSAR) models, their development, and …

Chemical predictive modelling to improve compound quality

JG Cumming, AM Davis, S Muresan… - Nature reviews Drug …, 2013 - nature.com
The'quality'of small-molecule drug candidates, encompassing aspects including their
potency, selectivity and ADMET (absorption, distribution, metabolism, excretion and toxicity) …

Explainable machine learning for property predictions in compound optimization: miniperspective

R Rodríguez-Pérez, J Bajorath - Journal of medicinal chemistry, 2021 - ACS Publications
The prediction of compound properties from chemical structure is a main task for machine
learning (ML) in medicinal chemistry. ML is often applied to large data sets in applications …

Machine Learning Methods for Property Prediction in Chemoinformatics: Quo Vadis?

A Varnek, I Baskin - Journal of chemical information and modeling, 2012 - ACS Publications
This paper is focused on modern approaches to machine learning, most of which are as yet
used infrequently or not at all in chemoinformatics. Machine learning methods are …

Understanding the learning mechanism of convolutional neural networks in spectral analysis

X Zhang, J Xu, J Yang, L Chen, H Zhou, X Liu, H Li… - Analytica Chimica …, 2020 - Elsevier
Deep learning approaches, especially convolutional neural network (CNN) models, have
achieved excellent performances in vibrational spectral analysis. The critical drawback of …