[HTML][HTML] In silico design and selection of new tetrahydroisoquinoline-based CD44 antagonist candidates
AJ Ruiz-Moreno, A Reyes-Romero, A Dömling… - Molecules, 2021 - mdpi.com
CD44 promotes metastasis, chemoresistance, and stemness in different types of cancer and
is a target for the development of new anti-cancer therapies. All CD44 isoforms share a …
is a target for the development of new anti-cancer therapies. All CD44 isoforms share a …
[HTML][HTML] Applying atomistic neural networks to bias conformer ensembles towards bioactive-like conformations
Identifying bioactive conformations of small molecules is an essential process for virtual
screening applications relying on three-dimensional structure such as molecular docking …
screening applications relying on three-dimensional structure such as molecular docking …
Physics-informed generative model for drug-like molecule conformers
DC Williams, N Inala - Journal of Chemical Information and …, 2024 - ACS Publications
We present a diffusion-based generative model for conformer generation. Our model is
focused on the reproduction of the bonded structure and is constructed from the associated …
focused on the reproduction of the bonded structure and is constructed from the associated …
An integrated approach to knowledge-driven structure-based virtual screening
AM Henzler, S Urbaczek, M Hilbig, M Rarey - Journal of computer-aided …, 2014 - Springer
In many practical applications of structure-based virtual screening (VS) ligands are already
known. This circumstance requires that the obtained hits need to satisfy initial made …
known. This circumstance requires that the obtained hits need to satisfy initial made …
Rl boltzmann generators for conformer generation in data-sparse environments
The generation of conformers has been a long-standing interest to structural chemists and
biologists alike. A subset of proteins known as intrinsically disordered proteins (IDPs) fail to …
biologists alike. A subset of proteins known as intrinsically disordered proteins (IDPs) fail to …
Conformer‐RL: A deep reinforcement learning library for conformer generation
R Jiang, T Gogineni, J Kammeraad… - Journal of …, 2022 - Wiley Online Library
Conformer‐RL is an open‐source Python package for applying deep reinforcement learning
(RL) to the task of generating a diverse set of low‐energy conformations for a single …
(RL) to the task of generating a diverse set of low‐energy conformations for a single …
Interactive design of generic chemical patterns
KT Schomburg, L Wetzer, M Rarey - Drug discovery today, 2013 - Elsevier
Every medicinal chemist has to create chemical patterns occasionally for querying
databases, applying filters or describing functional groups. However, the representations of …
databases, applying filters or describing functional groups. However, the representations of …
Decisions with confidence: application to the conformation sampling of molecules in the solid state
PCD Hawkins, S Wlodek - Journal of Chemical Information and …, 2020 - ACS Publications
Accurate conformations of a molecule are critical for reliable prediction of its properties, so
good predictive models require good conformations. Here, we present a method for …
good predictive models require good conformations. Here, we present a method for …
A Python library for efficient computation of molecular fingerprints
M Szafarczyk, P Ludynia, P Kukla - arXiv preprint arXiv:2403.19718, 2024 - arxiv.org
Machine learning solutions are very popular in the field of chemoinformatics, where they
have numerous applications, such as novel drug discovery or molecular property prediction …
have numerous applications, such as novel drug discovery or molecular property prediction …
Photophysical and theoretical studies of diphenylacetylene derivatives with restricted rotation
M Szyszkowska, C Czaplewski, W Wiczk - Journal of Molecular Structure, 2017 - Elsevier
Diphenylacetylene derivatives containing electron-donor (amino) and electron-acceptor
(ester) groups in 2, 2′ or 3, 2′ positions in phenyl rings were synthesized to study the …
(ester) groups in 2, 2′ or 3, 2′ positions in phenyl rings were synthesized to study the …