[HTML][HTML] Optimal assignment methods for ligand-based virtual screening

A Jahn, G Hinselmann, N Fechner, A Zell - Journal of cheminformatics, 2009 - Springer
Background Ligand-based virtual screening experiments are an important task in the early
drug discovery stage. An ambitious aim in each experiment is to disclose active structures …

Scaffold‐hopping: how far can you jump?

G Schneider, P Schneider… - QSAR & Combinatorial …, 2006 - Wiley Online Library
Finding new isofunctional chemotypes with the aim of identifying new lead candidates
remains a challenging task in medicinal chemistry. Different virtual screening techniques …

New methodologies for ligand-based virtual screening

FL Stahura, J Bajorath - Current pharmaceutical design, 2005 - ingentaconnect.com
Computational screening of compound databases has become increasingly popular in
pharmaceutical research. Virtual screening approaches can roughly be divided into target …

Performance of machine learning methods for ligand-based virtual screening

D Plewczynski, SAH Spieser… - Combinatorial chemistry & …, 2009 - ingentaconnect.com
Computational screening of compound databases has become increasingly popular in
pharmaceutical research. This review focuses on the evaluation of ligand-based virtual …

Benchmarking data sets for the evaluation of virtual ligand screening methods: review and perspectives

N Lagarde, JF Zagury, M Montes - Journal of chemical information …, 2015 - ACS Publications
Virtual screening methods are commonly used nowadays in drug discovery processes.
However, to ensure their reliability, they have to be carefully evaluated. The evaluation of …

Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches

H Eckert, J Bajorath - Drug discovery today, 2007 - Elsevier
The success of ligand-based virtual-screening calculations is influenced highly by the nature
of target-specific structure–activity relationships. This might pose severe constraints on the …

Critical comparison of virtual screening methods against the MUV data set

P Tiikkainen, P Markt, G Wolber… - Journal of chemical …, 2009 - ACS Publications
In the current work, we measure the performance of seven ligand-based virtual screening
tools-five similarity search methods and two pharmacophore elucidators-against the MUV …

[HTML][HTML] Condorcet and borda count fusion method for ligand-based virtual screening

A Ahmed, F Saeed, N Salim, A Abdo - Journal of cheminformatics, 2014 - Springer
Background It is known that any individual similarity measure will not always give the best
recall of active molecule structure for all types of activity classes. Recently, the effectiveness …

New methods for ligand-based virtual screening: use of data fusion and machine learning to enhance the effectiveness of similarity searching

J Hert, P Willett, DJ Wilton, P Acklin… - Journal of chemical …, 2006 - ACS Publications
Similarity searching using a single bioactive reference structure is a well-established
technique for accessing chemical structure databases. This paper describes two extensions …

Implementing relevance feedback in ligand-based virtual screening using Bayesian inference network

A Abdo, N Salim, A Ahmed - Journal of biomolecular …, 2011 - journals.sagepub.com
Recently, the use of the Bayesian network as an alternative to existing tools for similarity-
based virtual screening has received noticeable attention from researchers in the …