[HTML][HTML] Optimal assignment methods for ligand-based virtual screening
A Jahn, G Hinselmann, N Fechner, A Zell - Journal of cheminformatics, 2009 - Springer
Background Ligand-based virtual screening experiments are an important task in the early
drug discovery stage. An ambitious aim in each experiment is to disclose active structures …
drug discovery stage. An ambitious aim in each experiment is to disclose active structures …
Scaffold‐hopping: how far can you jump?
G Schneider, P Schneider… - QSAR & Combinatorial …, 2006 - Wiley Online Library
Finding new isofunctional chemotypes with the aim of identifying new lead candidates
remains a challenging task in medicinal chemistry. Different virtual screening techniques …
remains a challenging task in medicinal chemistry. Different virtual screening techniques …
New methodologies for ligand-based virtual screening
FL Stahura, J Bajorath - Current pharmaceutical design, 2005 - ingentaconnect.com
Computational screening of compound databases has become increasingly popular in
pharmaceutical research. Virtual screening approaches can roughly be divided into target …
pharmaceutical research. Virtual screening approaches can roughly be divided into target …
Performance of machine learning methods for ligand-based virtual screening
D Plewczynski, SAH Spieser… - Combinatorial chemistry & …, 2009 - ingentaconnect.com
Computational screening of compound databases has become increasingly popular in
pharmaceutical research. This review focuses on the evaluation of ligand-based virtual …
pharmaceutical research. This review focuses on the evaluation of ligand-based virtual …
Benchmarking data sets for the evaluation of virtual ligand screening methods: review and perspectives
Virtual screening methods are commonly used nowadays in drug discovery processes.
However, to ensure their reliability, they have to be carefully evaluated. The evaluation of …
However, to ensure their reliability, they have to be carefully evaluated. The evaluation of …
Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches
H Eckert, J Bajorath - Drug discovery today, 2007 - Elsevier
The success of ligand-based virtual-screening calculations is influenced highly by the nature
of target-specific structure–activity relationships. This might pose severe constraints on the …
of target-specific structure–activity relationships. This might pose severe constraints on the …
Critical comparison of virtual screening methods against the MUV data set
P Tiikkainen, P Markt, G Wolber… - Journal of chemical …, 2009 - ACS Publications
In the current work, we measure the performance of seven ligand-based virtual screening
tools-five similarity search methods and two pharmacophore elucidators-against the MUV …
tools-five similarity search methods and two pharmacophore elucidators-against the MUV …
[HTML][HTML] Condorcet and borda count fusion method for ligand-based virtual screening
Background It is known that any individual similarity measure will not always give the best
recall of active molecule structure for all types of activity classes. Recently, the effectiveness …
recall of active molecule structure for all types of activity classes. Recently, the effectiveness …
New methods for ligand-based virtual screening: use of data fusion and machine learning to enhance the effectiveness of similarity searching
Similarity searching using a single bioactive reference structure is a well-established
technique for accessing chemical structure databases. This paper describes two extensions …
technique for accessing chemical structure databases. This paper describes two extensions …
Implementing relevance feedback in ligand-based virtual screening using Bayesian inference network
Recently, the use of the Bayesian network as an alternative to existing tools for similarity-
based virtual screening has received noticeable attention from researchers in the …
based virtual screening has received noticeable attention from researchers in the …