Pcf11 orchestrates transcription termination pathways in yeast

P Grzechnik, MR Gdula, NJ Proudfoot - Genes & development, 2015 - genesdev.cshlp.org
In Saccharomyces cerevisiae, short noncoding RNA (ncRNA) generated by RNA
polymerase II (Pol II) are terminated by the NRD complex consisting of Nrd1, Nab3, and …

[HTML][HTML] Genome-wide mapping of yeast RNA polymerase II termination

P Schaughency, J Merran, JL Corden - PLoS genetics, 2014 - journals.plos.org
Yeast RNA polymerase II (Pol II) terminates transcription of coding transcripts through the
polyadenylation (pA) pathway and non-coding transcripts through the non-polyadenylation …

Pervasive transcription: a controlled risk

T Villa, O Porrua - The FEBS Journal, 2023 - Wiley Online Library
Transcriptome‐wide interrogation of eukaryotic genomes has unveiled the pervasive nature
of RNA polymerase II transcription. Virtually, any DNA region with an accessible chromatin …

[HTML][HTML] The exosome component Rrp6 is required for RNA polymerase II termination at specific targets of the Nrd1-Nab3 pathway

MJ Fox, H Gao, WR Smith-Kinnaman, Y Liu… - PLoS …, 2015 - journals.plos.org
The exosome and its nuclear specific subunit Rrp6 form a 3'-5'exonuclease complex that
regulates diverse aspects of RNA biology including 3'end processing and degradation of a …

Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast

SR Atkinson, S Marguerat, DA Bitton… - Rna, 2018 - rnajournal.cshlp.org
Long noncoding RNAs (lncRNAs), which are longer than 200 nucleotides but often unstable,
contribute a substantial and diverse portion to pervasive noncoding transcriptomes. Most …

[HTML][HTML] Ceg1 depletion reveals mechanisms governing degradation of non-capped RNAs in Saccharomyces cerevisiae

O Zanin, M Eastham, K Winczura, M Ashe… - Communications …, 2023 - nature.com
Most functional eukaryotic mRNAs contain a 5′ 7-methylguanosine (m7G) cap. Although
capping is essential for many biological processes including mRNA processing, export and …

Stress‐induced lnc RNA s evade nuclear degradation and enter the translational machinery

J Galipon, A Miki, A Oda, T Inada, K Ohta - Genes to Cells, 2013 - Wiley Online Library
Long noncoding RNAs (lncRNAs) play important roles in the regulation of gene expression.
In fission yeast, glucose starvation triggers a transcriptional cascade of polyadenylated …

[HTML][HTML] Enhancers regulate 3′ end processing activity to control expression of alternative 3′ UTR isoforms

B Kwon, MM Fansler, ND Patel, J Lee, W Ma… - Nature …, 2022 - nature.com
Multi-UTR genes are widely transcribed and express their alternative 3′ UTR isoforms in a
cell type-specific manner. As transcriptional enhancers regulate mRNA expression, we …

Rpd3L HDAC links H3K4me3 to transcriptional repression memory

BB Lee, A Choi, JH Kim, Y Jun, H Woo… - Nucleic acids …, 2018 - academic.oup.com
Transcriptional memory is critical for the faster reactivation of necessary genes upon
environmental changes and requires that the genes were previously in an active state …

Emerging properties and functional consequences of noncoding transcription

R Ard, RC Allshire, S Marquardt - Genetics, 2017 - academic.oup.com
Eukaryotic genomes are rich in transcription units encoding “long noncoding
RNAs”(lncRNAs). The purpose of all this transcription is unclear since most lncRNAs are …