Pcf11 orchestrates transcription termination pathways in yeast
P Grzechnik, MR Gdula, NJ Proudfoot - Genes & development, 2015 - genesdev.cshlp.org
In Saccharomyces cerevisiae, short noncoding RNA (ncRNA) generated by RNA
polymerase II (Pol II) are terminated by the NRD complex consisting of Nrd1, Nab3, and …
polymerase II (Pol II) are terminated by the NRD complex consisting of Nrd1, Nab3, and …
[HTML][HTML] Genome-wide mapping of yeast RNA polymerase II termination
P Schaughency, J Merran, JL Corden - PLoS genetics, 2014 - journals.plos.org
Yeast RNA polymerase II (Pol II) terminates transcription of coding transcripts through the
polyadenylation (pA) pathway and non-coding transcripts through the non-polyadenylation …
polyadenylation (pA) pathway and non-coding transcripts through the non-polyadenylation …
Pervasive transcription: a controlled risk
T Villa, O Porrua - The FEBS Journal, 2023 - Wiley Online Library
Transcriptome‐wide interrogation of eukaryotic genomes has unveiled the pervasive nature
of RNA polymerase II transcription. Virtually, any DNA region with an accessible chromatin …
of RNA polymerase II transcription. Virtually, any DNA region with an accessible chromatin …
[HTML][HTML] The exosome component Rrp6 is required for RNA polymerase II termination at specific targets of the Nrd1-Nab3 pathway
MJ Fox, H Gao, WR Smith-Kinnaman, Y Liu… - PLoS …, 2015 - journals.plos.org
The exosome and its nuclear specific subunit Rrp6 form a 3'-5'exonuclease complex that
regulates diverse aspects of RNA biology including 3'end processing and degradation of a …
regulates diverse aspects of RNA biology including 3'end processing and degradation of a …
Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast
SR Atkinson, S Marguerat, DA Bitton… - Rna, 2018 - rnajournal.cshlp.org
Long noncoding RNAs (lncRNAs), which are longer than 200 nucleotides but often unstable,
contribute a substantial and diverse portion to pervasive noncoding transcriptomes. Most …
contribute a substantial and diverse portion to pervasive noncoding transcriptomes. Most …
[HTML][HTML] Ceg1 depletion reveals mechanisms governing degradation of non-capped RNAs in Saccharomyces cerevisiae
O Zanin, M Eastham, K Winczura, M Ashe… - Communications …, 2023 - nature.com
Most functional eukaryotic mRNAs contain a 5′ 7-methylguanosine (m7G) cap. Although
capping is essential for many biological processes including mRNA processing, export and …
capping is essential for many biological processes including mRNA processing, export and …
Stress‐induced lnc RNA s evade nuclear degradation and enter the translational machinery
Long noncoding RNAs (lncRNAs) play important roles in the regulation of gene expression.
In fission yeast, glucose starvation triggers a transcriptional cascade of polyadenylated …
In fission yeast, glucose starvation triggers a transcriptional cascade of polyadenylated …
[HTML][HTML] Enhancers regulate 3′ end processing activity to control expression of alternative 3′ UTR isoforms
Multi-UTR genes are widely transcribed and express their alternative 3′ UTR isoforms in a
cell type-specific manner. As transcriptional enhancers regulate mRNA expression, we …
cell type-specific manner. As transcriptional enhancers regulate mRNA expression, we …
Rpd3L HDAC links H3K4me3 to transcriptional repression memory
Transcriptional memory is critical for the faster reactivation of necessary genes upon
environmental changes and requires that the genes were previously in an active state …
environmental changes and requires that the genes were previously in an active state …
Emerging properties and functional consequences of noncoding transcription
R Ard, RC Allshire, S Marquardt - Genetics, 2017 - academic.oup.com
Eukaryotic genomes are rich in transcription units encoding “long noncoding
RNAs”(lncRNAs). The purpose of all this transcription is unclear since most lncRNAs are …
RNAs”(lncRNAs). The purpose of all this transcription is unclear since most lncRNAs are …