[HTML][HTML] Computational approaches streamlining drug discovery

AV Sadybekov, V Katritch - Nature, 2023 - nature.com
Computer-aided drug discovery has been around for decades, although the past few years
have seen a tectonic shift towards embracing computational technologies in both academia …

[HTML][HTML] Artificial intelligence for drug discovery: Are we there yet?

C Hasselgren, TI Oprea - Annual Review of Pharmacology and …, 2024 - annualreviews.org
Drug discovery is adapting to novel technologies such as data science, informatics, and
artificial intelligence (AI) to accelerate effective treatment development while reducing costs …

ZINC-22─ A free multi-billion-scale database of tangible compounds for ligand discovery

BI Tingle, KG Tang, M Castanon… - Journal of chemical …, 2023 - ACS Publications
Purchasable chemical space has grown rapidly into the tens of billions of molecules,
providing unprecedented opportunities for ligand discovery but straining the tools that might …

Fake it until you make it? generative de novo design and virtual screening of synthesizable molecules

M Stanley, M Segler - Current Opinion in Structural Biology, 2023 - Elsevier
Computational techniques, including virtual screening, de novo design, and generative
models, play an increasing role in expediting DMTA cycles for modern molecular discovery …

[HTML][HTML] A comprehensive survey of prospective structure-based virtual screening for early drug discovery in the past fifteen years

H Zhu, Y Zhang, W Li, N Huang - International Journal of Molecular …, 2022 - mdpi.com
Structure-based virtual screening (SBVS), also known as molecular docking, has been
increasingly applied to discover small-molecule ligands based on the protein structures in …

The art and science of molecular docking

JM Paggi, A Pandit, RO Dror - Annual Review of Biochemistry, 2024 - annualreviews.org
Molecular docking has become an essential part of a structural biologist's and medicinal
chemist's toolkits. Given a chemical compound and the three-dimensional structure of a …

The impact of supervised learning methods in ultralarge high-throughput docking

CN Cavasotto, JI Di Filippo - Journal of Chemical Information and …, 2023 - ACS Publications
Structure-based virtual screening methods are, nowadays, one of the key pillars of
computational drug discovery. In recent years, a series of studies have reported docking …

Keeping pace with the explosive growth of chemical libraries with structure‐based virtual screening

J Kuan, M Radaeva, A Avenido… - Wiley …, 2023 - Wiley Online Library
Recent efforts to synthetically expand drug‐like chemical libraries have led to the
emergence of unprecedently large virtual databases. This surge of make‐on‐demand …

From proteins to ligands: decoding deep learning methods for binding affinity prediction

R Gorantla, A Kubincova, AY Weiße… - Journal of Chemical …, 2023 - ACS Publications
Accurate in silico prediction of protein–ligand binding affinity is important in the early stages
of drug discovery. Deep learning-based methods exist but have yet to overtake more …

Regression-based active learning for accessible acceleration of ultra-large library docking

E Marin, M Kovaleva, M Kadukova… - Journal of chemical …, 2023 - ACS Publications
Structure-based drug discovery is a process for both hit finding and optimization that relies
on a validated three-dimensional model of a target biomolecule, used to rationalize the …