[HTML][HTML] Computational approaches streamlining drug discovery
AV Sadybekov, V Katritch - Nature, 2023 - nature.com
Computer-aided drug discovery has been around for decades, although the past few years
have seen a tectonic shift towards embracing computational technologies in both academia …
have seen a tectonic shift towards embracing computational technologies in both academia …
[HTML][HTML] Artificial intelligence for drug discovery: Are we there yet?
C Hasselgren, TI Oprea - Annual Review of Pharmacology and …, 2024 - annualreviews.org
Drug discovery is adapting to novel technologies such as data science, informatics, and
artificial intelligence (AI) to accelerate effective treatment development while reducing costs …
artificial intelligence (AI) to accelerate effective treatment development while reducing costs …
ZINC-22─ A free multi-billion-scale database of tangible compounds for ligand discovery
BI Tingle, KG Tang, M Castanon… - Journal of chemical …, 2023 - ACS Publications
Purchasable chemical space has grown rapidly into the tens of billions of molecules,
providing unprecedented opportunities for ligand discovery but straining the tools that might …
providing unprecedented opportunities for ligand discovery but straining the tools that might …
Fake it until you make it? generative de novo design and virtual screening of synthesizable molecules
Computational techniques, including virtual screening, de novo design, and generative
models, play an increasing role in expediting DMTA cycles for modern molecular discovery …
models, play an increasing role in expediting DMTA cycles for modern molecular discovery …
[HTML][HTML] A comprehensive survey of prospective structure-based virtual screening for early drug discovery in the past fifteen years
H Zhu, Y Zhang, W Li, N Huang - International Journal of Molecular …, 2022 - mdpi.com
Structure-based virtual screening (SBVS), also known as molecular docking, has been
increasingly applied to discover small-molecule ligands based on the protein structures in …
increasingly applied to discover small-molecule ligands based on the protein structures in …
The art and science of molecular docking
Molecular docking has become an essential part of a structural biologist's and medicinal
chemist's toolkits. Given a chemical compound and the three-dimensional structure of a …
chemist's toolkits. Given a chemical compound and the three-dimensional structure of a …
The impact of supervised learning methods in ultralarge high-throughput docking
CN Cavasotto, JI Di Filippo - Journal of Chemical Information and …, 2023 - ACS Publications
Structure-based virtual screening methods are, nowadays, one of the key pillars of
computational drug discovery. In recent years, a series of studies have reported docking …
computational drug discovery. In recent years, a series of studies have reported docking …
Keeping pace with the explosive growth of chemical libraries with structure‐based virtual screening
J Kuan, M Radaeva, A Avenido… - Wiley …, 2023 - Wiley Online Library
Recent efforts to synthetically expand drug‐like chemical libraries have led to the
emergence of unprecedently large virtual databases. This surge of make‐on‐demand …
emergence of unprecedently large virtual databases. This surge of make‐on‐demand …
From proteins to ligands: decoding deep learning methods for binding affinity prediction
Accurate in silico prediction of protein–ligand binding affinity is important in the early stages
of drug discovery. Deep learning-based methods exist but have yet to overtake more …
of drug discovery. Deep learning-based methods exist but have yet to overtake more …
Regression-based active learning for accessible acceleration of ultra-large library docking
E Marin, M Kovaleva, M Kadukova… - Journal of chemical …, 2023 - ACS Publications
Structure-based drug discovery is a process for both hit finding and optimization that relies
on a validated three-dimensional model of a target biomolecule, used to rationalize the …
on a validated three-dimensional model of a target biomolecule, used to rationalize the …