Concerted evolution rapidly eliminates sequence variation in rDNA coding regions but not in intergenic spacers in Nicotiana tabacum allotetraploid

J Lunerová, S Renny-Byfield, R Matyášek… - Plant Systematics and …, 2017 - Springer
Nicotiana tabacum (tobacco) is a natural allotetraploid that formed from two diploid
progenitors (N. sylvestris—S-genome, N. tomentosiformis—T-genome) within past 0.2 …

Genome size expansion and the relationship between nuclear DNA content and spore size in the Asplenium monanthes fern complex (Aspleniaceae)

RJ Dyer, J Pellicer, V Savolainen, IJ Leitch… - BMC Plant …, 2013 - Springer
Background Homosporous ferns are distinctive amongst the land plant lineages for their
high chromosome numbers and enigmatic genomes. Genome size measurements are an …

Genome-Wide Identification and Characterization of the RCI2 Gene Family in Allotetraploid Brassica napus Compared with Its Diploid Progenitors

W Sun, M Li, J Wang - International Journal of Molecular Sciences, 2022 - mdpi.com
Brassica napus and its diploid progenitors (B. rapa and B. oleracea) are suitable for studying
the problems associated with polyploidization. As an important anti-stress protein, RCI2 …

Arguments for standardizing transposable element annotation in plant genomes

R Ragupathy, FM You, S Cloutier - Trends in plant science, 2013 - cell.com
Whole genome sequence assemblies have been generated for many plants. Annotation of
transposable elements (TEs), which constitute the major proportion of genomes and play a …

[HTML][HTML] Repeat evolution in Brassica rapa (AA), B. oleracea (CC), and B. napus (AACC) genomes

NE Waminal, S Perumal, J Lee, HH Kim… - Plant breeding and …, 2016 - plantbreedbio.org
The genus Brassica is an important resource for major agricultural products such as oils,
vegetable and fodder. The Brassiceae tribe-specific whole-genome triplication that …

Measuring the Invisible: The Sequences Causal of Genome Size Differences in Eyebrights (Euphrasia) Revealed by k-mers

H Becher, J Sampson, AD Twyford - Frontiers in plant science, 2022 - frontiersin.org
Genome size variation within plant taxa is due to presence/absence variation, which may
affect low-copy sequences or genomic repeats of various frequency classes. However …

Efficient screening of long terminal repeat retrotransposons that show high insertion polymorphism via high-throughput sequencing of the primer binding site

Y Monden, N Fujii, K Yamaguchi, K Ikeo… - …, 2014 - cdnsciencepub.com
Retrotransposons have been used frequently for the development of molecular markers by
using their insertion polymorphisms among cultivars, because multiple copies of these …

[HTML][HTML] Application of iPBS in high-throughput sequencing for the development of retrotransposon-based molecular markers

Y Monden, K Yamaguchi, M Tahara - Current Plant Biology, 2014 - Elsevier
Retrotransposons are major components of higher plant genomes, and long terminal repeat
(LTR) retrotransposons are especially predominant. Thus, numerous LTR retrotransposon …

[PDF][PDF] Генетические последствия межвидовой гибридизации, ее роль в видообразовании и фенотипическом разнообразии растений

АВ Родионов, АВ Амосова, ЕА Беляков… - Генетика, 2019 - researchgate.net
Обзор посвящен генетическим последствиям межвидовой гибридизации и обсуждению
ее роли в видообразовании и повышении генетического разнообразия растений, в том …

The timetable for allopolyploidy in flowering plants

DA Levin - Annals of Botany, 2013 - academic.oup.com
Background Our understanding of the processes and dynamics of allopolyploid speciation,
the long-term consequences of ploidal change, and the genetic and chromosomal changes …