Analysis of synonymous codon usage patterns in mitochondrial genomes of nine Amanita species

Q Li, Y Luo, A Sha, W Xiao, Z Xiong, X Chen… - Frontiers in …, 2023 - frontiersin.org
Introduction Codon basis is a common and complex natural phenomenon observed in many
kinds of organisms. Methods In the present study, we analyzed the base bias of 12 …

Global characterization of fungal mitogenomes: new insights on genomic diversity and dynamism of coding genes and accessory elements

PLC Fonseca, RB De-Paula, DS Araújo… - Frontiers in …, 2021 - frontiersin.org
Fungi comprise a great diversity of species with distinct ecological functions and lifestyles.
Similar to other eukaryotes, fungi rely on interactions with prokaryotes and one of the most …

Mitochondrial genomic landscape: a portrait of the mitochondrial genome 40 years after the first complete sequence

A Formaggioni, A Luchetti, F Plazzi - Life, 2021 - mdpi.com
Notwithstanding the initial claims of general conservation, mitochondrial genomes are a
largely heterogeneous set of organellar chromosomes which displays a bewildering …

The first two mitochondrial genomes for the genus Ramaria reveal mitochondrial genome evolution of Ramaria and phylogeny of Basidiomycota

Q Li, L Li, T Zhang, P Xiang, Q Wu, W Tu, Z Bao, L Zou… - IMA fungus, 2022 - Springer
In the present study, we assembled and analyzed the mitogenomes of two Ramaria species.
The assembled mitogenomes of Ramaria cfr. rubripermanens and R. rubella were …

The First Five Mitochondrial Genomes for the Family Nidulariaceae Reveal Novel Gene Rearrangements, Intron Dynamics, and Phylogeny of Agaricales

Z Li, T Xie, X Feng, Z Wang, C Lin, G Li, XZ Li… - International Journal of …, 2023 - mdpi.com
The family Nidulariaceae, consisting of five genera including Cyathus, is a unique group of
mushrooms commonly referred to as bird's nest fungi due to their striking resemblance to …

The Assembled and Annotated Genome of the Fairy-Ring Fungus Marasmius oreades

M Hiltunen, SL Ament-Velásquez… - Genome Biology and …, 2021 - academic.oup.com
Marasmius oreades is a basidiomycete fungus that grows in so called “fairy rings,” which are
circular, underground mycelia common in lawns across temperate areas of the world. Fairy …

[HTML][HTML] Comparative analyses of Pleurotus pulmonarius mitochondrial genomes reveal two major lineages of mini oyster mushroom cultivars

Y Yu, T Liu, Y Wang, L Liu, X He, J Li, FM Martin… - Computational and …, 2024 - Elsevier
Pleurotus pulmonarius, commonly known as the mini oyster mushroom, is highly esteemed
for its crisp texture and umami flavor. Limited genetic diversity among P. pulmonarius …

The mitogenomes of Leptographium aureum, Leptographium sp., and Grosmannia fruticeta: expansion by introns

J Mukhopadhyay, A Wai, G Hausner - Frontiers in Microbiology, 2023 - frontiersin.org
Introduction Many members of the Ophiostomatales are of economic importance as they are
bark-beetle associates and causative agents for blue stain on timber and in some instances …

[HTML][HTML] Mitogenome-wide comparison and phylogeny reveal group I intron dynamics and intraspecific diversification within the phytopathogen Corynespora …

Q Ma, H Wu, Y Geng, Q Li, R Zang, Y Guo, C Xu… - Computational and …, 2021 - Elsevier
Corynespora cassiicola, the causal agent of an extensive range of plant diseases
worldwide, is a momentous fungus with diverse lifestyles and rich in intraspecies variations …

Multiple rearrangements and low inter- and intra-species mitogenome sequence variation in the Heterobasidion annosum sl species complex

K Himmelstrand, M Brandström Durling… - Frontiers in …, 2023 - frontiersin.org
Introduction Mitochondria are essential organelles in the eukaryotic cells and responsible for
the energy production but are also involved in many other functions including virulence of …