[HTML][HTML] Connections between amino acid metabolisms in plants: lysine as an example

Q Yang, D Zhao, Q Liu - Frontiers in Plant Science, 2020 - frontiersin.org
Extensive efforts have been made to fortify essential amino acids and boost nutrition in
plants, but unintended effects on growth and physiology are also observed. Understanding …

Metabolomics 20 years on: what have we learned and what hurdles remain?

S Alseekh, AR Fernie - The Plant Journal, 2018 - Wiley Online Library
The term metabolome was coined in 1998, by analogy to genome, transcriptome and
proteome. The first research papers using the terms metabolomics, metabonomics …

[HTML][HTML] Multilevel regulation of abiotic stress responses in plants

DC Haak, T Fukao, R Grene, Z Hua, R Ivanov… - Frontiers in plant …, 2017 - frontiersin.org
The sessile lifestyle of plants requires them to cope with stresses in situ. Plants overcome
abiotic stresses by altering structure/morphology, and in some extreme conditions, by …

Metabolic GWAS‐based dissection of genetic bases underlying the diversity of plant metabolism

C Fang, J Luo - The Plant Journal, 2019 - Wiley Online Library
Plants have served as sources providing humans with metabolites for food and nutrition,
biomaterials for living, and treatment for pain and disease. Plants produce a huge array of …

Association mapping in plants in the post-GWAS genomics era

PK Gupta, PL Kulwal, V Jaiswal - Advances in genetics, 2019 - Elsevier
With the availability of DNA-based molecular markers during early 1980s and that of
sophisticated statistical tools in late 1980s and later, it became possible to identify genomic …

[HTML][HTML] Network-based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation

L Perez De Souza, S Alseekh, Y Brotman… - Expert Review of …, 2020 - Taylor & Francis
Introduction Metabolomics has become a crucial part of systems biology; however, data
analysis is still often undertaken in a reductionist way focusing on changes in individual …

The genetics of plant metabolism

AR Fernie, T Tohge - Annual Review of Genetics, 2017 - annualreviews.org
Plant metabolic studies have traditionally focused on the role and regulation of the enzymes
catalyzing key reactions within specific pathways. Within the past 20 years, reverse genetic …

Integrating coexpression networks with GWAS to prioritize causal genes in maize

RJ Schaefer, JM Michno, J Jeffers, O Hoekenga… - The Plant …, 2018 - academic.oup.com
Genome-wide association studies (GWAS) have identified loci linked to hundreds of traits in
many different species. Yet, because linkage equilibrium implicates a broad region …

The metabolic roles of free amino acids during seed development

R Amir, G Galili, H Cohen - Plant Science, 2018 - Elsevier
Amino acids play vital roles in the central metabolism of seeds. They are primarily utilized for
the synthesis of seed-storage proteins, but also serve as precursors for the biosynthesis of …

Natural variation reveals that OsSAP16 controls low-temperature germination in rice

X Wang, B Zou, Q Shao, Y Cui, S Lu… - Journal of …, 2018 - academic.oup.com
Low temperature affects seed germination in plants, and low-temperature germination (LTG)
is an important agronomic trait. Natural variation of LTG has been reported in rice, but the …